Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4 288 9e-73 >seq4 Length=1653377 Score = 288 bits (318), Expect = 9e-73 Identities = 625/916 (68%), Gaps = 31/916 (3%) Strand=Plus/Minus Query 15886 TTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACAT--T 15943 ||||||||| | | || |||||| || | |||||| | | | |||||| || | | Sbjct 1529809 TTAAAAATCTGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAAC--ACCTGAT 1529752 Query 15944 TTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTT 16003 |||||||| || |||||||||||||||||||||||||||||||| ||| || || Sbjct 1529751 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAAG 1529692 Query 16004 TCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAA---TTCCAAC 16060 ||||| || ||| |||||||||||| | |||| || || || ||| || Sbjct 1529691 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAA- 1529633 Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCAC-AGTTCATTCCTAT 16119 ||||| ||| || |||||||| ||||| || ||| || || | |||||||| || Sbjct 1529632 --TAATCGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCTTGAATTCATTCCAAT 1529576 Query 16120 TAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGAT 16179 ||| | | ||| | | ||| | ||| | |||||| | ||| ||||| | | Sbjct 1529575 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1529516 Query 16180 TATATCTCTTACTACACTATT----TAACGGAGGGTTTAATAAGTGTTTAAACATTATAC 16235 ||||| | || || || || ||| | | ||| ||| || | |||| || Sbjct 1529515 TATATTTTGAACAAC-CTCTTCTGGTAATTTATTTTCTAACAAGC---TATAAATTAAAC 1529460 Query 16236 AAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGAC 16295 || |||||| || |||||||| |||||||| ||||| || || |||||| | || Sbjct 1529459 AATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAAC 1529400 Query 16296 C-TGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 | || ||| | | ||||||||| ||||||||| || ||| ||| ||| ||| Sbjct 1529399 CATGTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 1529341 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 || ||||| || ||| || || | || ||| | | | |||| || | Sbjct 1529340 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGA---ATTTGTATCATTG 1529284 Query 16415 atccattttttagcccaatttgcttt-ttgtttAACACAGTTCATGTTCTCTATTGCATT 16473 |||||||| ||||| |||||| || |||| | | | || || || || |||| Sbjct 1529283 ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATG 1529225 Query 16474 AAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACAT 16533 |||||||| | ||||| ||| ||||||| |||| |||| ||||||||| | Sbjct 1529224 AAATAAATTTAACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGT 1529165 Query 16534 TTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATAT 16593 ||| ||||| ||||| || | ||||| |||||| |||||| | | ||||| ||| Sbjct 1529164 TTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTAT 1529105 Query 16594 TTGTACTTCAGAGTAAAACCTTTCT-GCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 |||||| || ||||| || || || || ||||| ||||||||||| ||||||| Sbjct 1529104 TTGTACCTCTCT-TAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTG 1529046 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttC-GTTATCTGAAAGTTTTAACCAG 16711 ||||||| || | | ||||| ||||||| |||||| ||| | || |||| | || Sbjct 1529045 CAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCA-AAG 1528987 Query 16712 TCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTT 16771 || ||||| |||||||||| | |||||| |||||||||| || || |||| ||| Sbjct 1528986 TCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTT 1528927 Query 16772 TTATACATTTTCCATA 16787 ||||| | ||||||| Sbjct 1528926 TTATAAAAATTCCATA 1528911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462511716711400