Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq11 205 7e-48 >seq11 Length=733468 Score = 205 bits (226), Expect = 7e-48 Identities = 411/604 (68%), Gaps = 9/604 (1%) Strand=Plus/Minus Query 20043 ATTTCCC-TTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTATTAT 20101 ||||||| |||||||| || ||| ||||| | ||| | ||||||||||||||| Sbjct 126543 ATTTCCCATTATTAACAACAAAAAAATTATTTGTAAGAGGTATCATTGAAGAGTTATTAT 126484 Query 20102 GGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGA 20161 ||||||| | ||| ||||||| | | |||||||| || | || ||| Sbjct 126483 GGTTTATAAGGGGAGAAACAAATGGAAATACATTATTAGAAAAAAATGTAAGAATATGGG 126424 Query 20162 GCGCACATGGATCTAAGCAATTTTTACACA---GCAATGGATTTGACAACCGTCAAGAGG 20218 || |||| | | | |||||| | | | || |||| | | | ||| Sbjct 126423 AAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAATTATTTCATA---GAGAAGTTA 126367 Query 20219 GGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACA 20278 || || || || | |||||||||||||||||||| ||||| |||||||| || | Sbjct 126366 ATGACTTAGGGCCGATCTATGGATTTCAATGGAGACACTTTGGTGCTGAATACACAGATA 126307 Query 20279 TGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTAATTA 20338 || | | ||||| | |||| || ||||| ||| ||||| |||| |||||||||| Sbjct 126306 TGTATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATTTAATTA 126247 Query 20339 AAAC-GAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCT 20397 ||| || || | | | ||| |||||||||| || || ||||| | |||||| | | Sbjct 126246 AAAATGATCCGACATGT-AGACGAATTATTTTGTGTGCATGGAATGTAAAAGATTTAGAT 126188 Query 20398 TTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAATTG 20457 |||||| || ||||| |||||||| |||| |||||||| ||| | || |||| Sbjct 126187 CAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAAAATTA 126128 Query 20458 TCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATTGCA 20517 || ||| |||||||||||||| |||| | || || |||||||| || |||||||| Sbjct 126127 TCATGTATTATGTATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCATTTAATATTGCT 126068 Query 20518 AGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGACTTA 20577 ||| | | |||| |||||||| ||||| || ||||| || | | ||| || Sbjct 126067 TCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTGAATTT 126008 Query 20578 GTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTACAG 20637 | || ||||| | || ||| |||| ||||||| | ||| ||||||| | ||| Sbjct 126007 ATACATGTATTAGGAAATGCTCATGTTTATAATAATCATGTTGAAAGTTTAAAAATTCAG 125948 Query 20638 TTAA 20641 |||| Sbjct 125947 TTAA 125944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183761612305