Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 235 5e-57 >seq4 Length=1653377 Score = 235 bits (260), Expect = 5e-57 Identities = 609/907 (67%), Gaps = 37/907 (4%) Strand=Plus/Minus Query 13856 TAAAAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13915 |||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1529808 TAAAAATCTGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1529749 Query 13916 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13975 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1529748 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAAGTCC 1529689 Query 13976 ATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 14032 || || |||||||||| |||| || |||||| |||||||| |||||||| Sbjct 1529688 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAATA-- 1529631 Query 14033 AATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 14091 ||| ||| |||| || || |||||||||||||| || || ||||||| || |||| Sbjct 1529630 -ATCGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1529573 Query 14092 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 14150 | ||| | | ||| || |||| | |||||| || || || || | | Sbjct 1529572 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1529514 Query 14151 TAATCGTAATAATTTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 14207 || | || || || | | | | |||||| | | | | | |||||||||| Sbjct 1529513 TATTTTGAACAACCTCTTCTG--GTAATTTATTTTCTAACAAGCT-ATAAATTAAACAAT 1529457 Query 14208 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 14266 |||||| || | || ||||| |||||||| | ||| || ||||||||| || | Sbjct 1529456 TAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1529397 Query 14267 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATT 14326 | || || | ||||||| ||||||||||||||| || ||| ||| |||||| Sbjct 1529396 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 1529338 Query 14327 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--A 14384 || || || ||| |||| | || ||| |||| || ||||| || | Sbjct 1529337 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAA-----TTTGTATCATTGA 1529283 Query 14385 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14444 ||||||| |||||| | ||| ||||| || || |||||||||||| || Sbjct 1529282 TCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAA 1529223 Query 14445 ATAAATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14502 |||||| | | ||||||| | ||| ||| || ||||||| | ||| ||||| | Sbjct 1529222 ATAAATTTAACCTCTCTTTCTCATCCTT--AATATAATTATCAATTAATAAACTATATGT 1529165 Query 14503 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14562 |||||| ||||| ||||| | |||||| |||||| |||||| | | ||||| Sbjct 1529164 TTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTAT 1529105 Query 14563 TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14622 |||||||||| ||||| | ||||||||||| ||||| |||||||||||||| Sbjct 1529104 TTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGC 1529045 Query 14623 AAAAAATGCCA--ATATGTTTTTAATAAAGTATTGC-TCTTCATTGCTGAGTTTTTTCCA 14679 ||||||||| | | ||||||| | || || || | | | |||| | | |||||| | Sbjct 1529044 AAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT--TAA--TTTTTCAA 1528989 Query 14680 A-TCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTT 14738 | || ||||| | || | ||||| || ||| | |||||||| || |||||| Sbjct 1528988 AGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTT 1528929 Query 14739 TTTTATA 14745 ||||||| Sbjct 1528928 TTTTATA 1528922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482345304563320