Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 2e-13 seq13 86.0 9e-12 >seq1 Length=2470179 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/190 (71%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 73930 ATGGAGATATACTAGTGCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTC 73989 |||| ||||| || | | ||||||||||| |||||||| ||||| ||| || Sbjct 1720711 ATGGTGATATTGTATTATTTAATAGACAACCATCTTTACATCGTATGTCAATTATGTGTC 1720652 Query 73990 TTCGAGTTAAAATTATGGATGTAAAAACCTTTAAATTTAATCT---TGCATGCACTAAAC 74046 | || | | |||||||| ||||| ||| |||||| || ||| | | | Sbjct 1720651 ATAAAGCTCGAGTTATGGATTATAAAACATTTCGTTTTAATGAATGTGTATGTAGT---C 1720595 Query 74047 CATATAATGCAGATTTTGATGGAGATGAAATGAATGCTCATGCGCCTCAATCAGAAGAAA 74106 ||||||||||||| |||||||||||||| |||||| |||| |||||| |||||||| Sbjct 1720594 CATATAATGCAGACTTTGATGGAGATGAGATGAATTTACATGTACCTCAAACAGAAGAAT 1720535 Query 74107 GTAAAGCTGA 74116 || ||| || Sbjct 1720534 CTAGAGCAGA 1720525 >seq13 Length=615600 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/193 (71%), Gaps = 8/193 (4%) Strand=Plus/Minus Query 188919 CATACAATCTTTTTCCATTTCTCCGATTCTTAAACCTCCTTCATTTGCTCTCCCGTTTAG 188978 |||||||||| ||||||||||||| | ||||||||| || || ||| ||| || | | Sbjct 434083 CATACAATCTCTTTCCATTTCTCCAAATCTTAAACCACCATCTCTTGATCTTCCTTCTGT 434024 Query 188979 TGGTTGCCTAGTAATTGCATGTCGTTTTTGGT-TTGTACTTGCTCTTGAAAATATTTTAT 189037 |||||| || ||||| || | ||| ||| | |||| ||| | | |||||||| Sbjct 434023 TGGTTGTCTTGTAAT--CA--TAGTTAGAGGTCCTCTACT---TCTGGCATGTATTTTAT 433971 Query 189038 CTGATACCATGTGCGTCAATCTGTGGTAATATACTGGTCCAAAGAAGATTTCTGCTCTAA 189097 || |||||| || | ||||| || ||| || |||||| | || |||| | | | | Sbjct 433970 CTTCTACCATATGTTTTAATCTTTGATAAAATGTTGGTCCTATAAATATTTTCGATTTTA 433911 Query 189098 GTTTTTTACCATT 189110 | || ||||||| Sbjct 433910 GCATTCTACCATT 433898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679813983613680