Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8 417 1e-111 seq4 159 4e-34 >seq8 Length=956651 Score = 417 bits (462), Expect = 1e-111 Identities = 982/1461 (67%), Gaps = 35/1461 (2%) Strand=Plus/Minus Query 62421 TAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGAT 62480 ||||| ||||| ||||| ||||| | || ||||||||||| |||||||| | |||||| Sbjct 457935 TAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAA 457876 Query 62481 GCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCT 62540 || || ||||||||||| | | | | |||||| | || | | || ||||| | | Sbjct 457875 GCTGTTGGCATAGGTGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTT 457816 Query 62541 TTTAGATGTTCCCAATTCCAAAGATCCGACGGTACAA---CANNNNNNNNNNNATATTGT 62597 |||| ||||||| |||| | ||| || | ||||| Sbjct 457815 TTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGT 457756 Query 62598 AGAATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCC--TTCCTTCTCA 62654 | || || || || || | || | ||| ||||| |||||||| || || ||| | Sbjct 457755 AATATTCCTTTGCTTGCTGGACTA-CCTTGATATGATTCATATGGGCCATTTACTTGT-- 457699 Query 62655 GCTAGTTTACAACTCGCC---TCTAATGCACCGTAATAAATGGTTTCAAAGAT-CTTCTT 62710 |||| || |||| || | ||||| ||| | ||||| || |||||||| || ||||| Sbjct 457698 GCTAATT--CAAC-CGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT- 457643 Query 62711 ATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGC 62770 ||||| |||| |||||| ||| ||||||| |||| || ||||| | || || Sbjct 457642 ATTTAATTCTTTAGCTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGC 457583 Query 62771 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62830 ||||||||| || || || || |||||||||||||| ||||| || ||||||||||| Sbjct 457582 TAATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTT 457523 Query 62831 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCAC 62890 ||| || |||||||| | || |||||||||| | |||||| ||| | ||| | Sbjct 457522 AATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAAT 457463 Query 62891 ATCCTTCAGTTTGAGAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGC 62944 ||| | | ||| ||||| ||| | ||||| ||||| | ||||| Sbjct 457462 ATCGTATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGC 457403 Query 62945 AACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGT 63004 || || || |||||||| || ||||| |||| || | ||||| || || ||| Sbjct 457402 AATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACA 457343 Query 63005 GCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGC 63064 || | ||||||||| || || || |||||||||| ||||||| || ||||| || Sbjct 457342 ACATAAATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGC 457283 Query 63065 ATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCA 63124 ||| ||||| | || |||| |||||||||||| || || || || || ||| Sbjct 457282 ATCTTTATATAACATATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCA 457223 Query 63125 GACGACTCGAGCCTTTATTATAGATTTGTATCT--CCTTTCTCTTTCGTATAGAGTATAC 63182 | || | || | | | ||| || || ||||| ||| ||| ||||| Sbjct 457222 TAAATCTTGTGCAAGAACTGT--TTTTTTACCTAAATTTTCTTCTTCATATTTTGTATAT 457165 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTC-CAATCTAGGACATTCATCCGGACACAT 63241 ||| ||| || || || |||| || ||| | || | |||||||||| |||||||| Sbjct 457164 AATTTTTCAAATTCTTCACCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACAT 457106 Query 63242 CAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC 63301 || | ||| | | | || || || | |||||||| | |||||| | ||| | ||| Sbjct 457105 TAAAGTCCAGTGTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGC 457046 Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 ||||| ||| | | ||| ||| || || || ||| ||| | | ||| | || Sbjct 457045 ATAAAATAAATCACGAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAA 456986 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | ||||||||| ||||| || || | |||| || | | || | ||| Sbjct 456985 TTCAAAAATATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCC 456926 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || || ||||||| ||||| || || | |||| ||||||| |||||||||| | || Sbjct 456925 GCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCC 456866 Query 63482 GTTTGATATACCATTGGTACCGGAGATAT-AGCCTCCACTGGCACGAATATTACTAATTG 63540 |||||||||||||| || || |||| || | | | ||||||| | | Sbjct 456865 ATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGT-CCTCGAATATCTTGTACAG 456807 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | |||||| || ||||| ||||| ||| ||||| ||| | ||||| || ||| | | Sbjct 456806 CAACACCTATACCTCCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATA 456747 Query 63601 TGCCTTCTATGCTATCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGA 63659 | |||||||| |||| ||| || ||| || |||||| |||||||||| | | Sbjct 456746 TACCTTCTATTGAATCAGATTTCATTGATAA-TAAAAAACATGAAGACATTTGGGGTCTT 456688 Query 63660 GTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGA 63719 | ||||||| ||||||||| ||||||| ||| || ||||| |||||| ||| | || | Sbjct 456687 GGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAA 456628 Query 63720 TTGTACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCAT 63778 | ||| || || | |||| || ||||| || | ||| ||||||| | || | ||| Sbjct 456627 TGGTAAGTTTCTAAAGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCAT 456569 Query 63779 TAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTC 63838 ||| | || ||||| | ||||| |||||| || || || || ||||| || | || Sbjct 456568 TAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTC 456509 Query 63839 CAAAGTTTTAAAACCAAAATA 63859 || |||||||| |||||||| Sbjct 456508 TAATGTTTTAAATCCAAAATA 456488 >seq4 Length=1653377 Score = 159 bits (176), Expect = 4e-34 Identities = 372/556 (67%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 33588 AAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGC 33647 |||||| ||| | || || || |||||||||||||| ||| ||| || | || | Sbjct 1529454 AAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGT 1529395 Query 33648 ATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCT 33707 | | | ||||||| ||||||||| | | || ||| ||| || |||||| Sbjct 1529394 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1529335 Query 33708 TCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 33767 || || ||| || | || ||| || || || | |||| ||||| || Sbjct 1529334 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTGATCCATTTA 1529275 Query 33768 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 33827 ||||| || || ||||||| || || |||| || |||| ||| | || Sbjct 1529274 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1529215 Query 33828 tttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGA 33887 | || || ||| |||| |||| |||| || || | |||||| |||| ||||| Sbjct 1529214 AACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGT 1529155 Query 33888 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 || ||||||| || || ||||| || || | | || || | || || || ||| Sbjct 1529154 ATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCT 1529095 Query 33948 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGC 34006 | ||||| | || || |||||||| |||||||||||||| ||||||||||| || Sbjct 1529094 CTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1529036 Query 34007 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 34065 || |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1529035 TAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1528977 Query 34066 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 34125 | | |||| ||| | ||||| | ||||||||||| || || || |||||||| | || Sbjct 1528976 CACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAAT 1528917 Query 34126 TCCAGATGTCATGATA 34141 |||| | ||| |||| Sbjct 1528916 TCCATACCTCAGGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817214236720