Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq8 607 8e-169 seq4 275 6e-69 >seq8 Length=956651 Score = 607 bits (672), Expect = 8e-169 Identities = 1191/1733 (69%), Gaps = 36/1733 (2%) Strand=Plus/Minus Query 36957 GTCGGCTGCCATTTCTAAAATACATTTTTGAGATATCTCCCAAACCGTTTTATATATTTG 37016 ||| || ||||| || | |||| |||||| || |||||||| |||||||| | || Sbjct 458152 GTCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTCCCAAACTGTTTTATACAATTC 458093 Query 37017 TTTTATATTATCTGGTAAATC--TAA-ATGTTGAATAGAACCATTATGTAACAC-AATTG 37072 ||| | | | |||| || ||| || ||| | | |||||||| | ||||| Sbjct 458092 TTTCAAGTCACTAGGTATTTCACTAATATATTGGACACTTCCATTATGGGCAATTAATTG 458033 Query 37073 TATTCTTTATGTCATTATTCCACATATTTCTACTTATTAGTTCTCTCAATAGGTGTGGAT 37132 | | || || || | || ||| | | |||| | || ||| | |||| || |||| Sbjct 458032 TTGT-TTCATATCTTCATCCCAAAGACCTCTATCAAAAAGATCTTTTAATAAATGGGGAT 457974 Query 37133 TTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTT 37192 | ||||| ||| || ||| ||| || | ||| ||| || || || |||||||||| Sbjct 457973 TGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGTATATGGTT 457914 Query 37193 CAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTA 37252 ||| ||| |||||||| | ||| ||||| || || || || || ||||| ||||||| | Sbjct 457913 CAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGGTGCTAAAA 457854 Query 37253 GAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATA 37312 |||| |||||| |||||||| || | ||| | ||||||| | || ||||||||| | Sbjct 457853 GAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCAATCCCA-A 457795 Query 37313 AATCTGTTGGGTTCTTTAAC----CACATATCATATTGTAGAATACCTTTACTCGCTGGA 37368 || | || | |||| | ||||||||| |||||| || ||||| || |||||| Sbjct 457794 TATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGCTTGCTGGA 457735 Query 37369 GAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATT-CTAG 37427 | | | ||||| ||||| || || | | || |||| ||| | | | ||| ||| Sbjct 457734 CTACCTTGATATGATTCATATGGGCCATTTACTTGTGCTAATTCA-ACCGACATTTCTAA 457676 Query 37428 TGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATC 37487 || |||||||| || ||||| || ||| | |||||||| ||| ||||| || || Sbjct 457675 AGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCCTCAGATTC 457616 Query 37488 GAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGG 37547 ||| ||| | || | ||||| ||| || || || || || || || || || || Sbjct 457615 ATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCCTATTCCAATAGG 457556 Query 37548 TCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTAT 37607 ||||||| | ||||| ||| | | |||| | | ||| |||||||| | || || || Sbjct 457555 TCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAATTTCTTTCAATAAT 457496 Query 37608 TTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAACAT-AAATA 37666 ||||| || |||| || | ||||| ||||| || | | || | || || |||| Sbjct 457495 TTTATCTAAATTTCTAGTAATAATTTTAGTAAT-ATCGTATAATTTTTTAAAATTAAATT 457437 Query 37667 CGTTATT------ATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAA 37720 | || || || ||||||||||| || | ||| || |||||||||| ||||| | Sbjct 457436 CTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGATTACAAACAGCTA 457377 Query 37721 CTTCATCTTCGTTAC-TAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTT 37779 ||||||| || | || ||| ||||| || ||| | |||||| || ||||||| Sbjct 457376 CTTCATCAG-GTGATGTATATTCAATAATTTCACAACATAAATTACTACATTTAATTGTC 457318 Query 37780 CCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTT 37839 || ||||| ||||||| ||||| |||||| | ||||||||||| ||||| || Sbjct 457317 CCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACATATATGGTACA 457258 Query 37840 CCTTGTTCTATTTGAGCCTCGATA-ATAGATTTCCATAAACTTCTTGCTTTAACGATCGC 37898 || ||| ||||| || | | | |||| ||||||| | ||| ||| | Sbjct 457257 CCAGTTTCAATTTG-GCTTTGTAATATAGCAAACCATAAATCTTGTGCAAGAACTGTTTT 457199 Query 37899 TTTAAttt--ttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCAT 37956 |||| | ||||||| ||| |||| | |||||||||| | ||| || | ||||| Sbjct 457198 TTTACCTAAATTTTCTTC--TTCATATTTTGTATATAATTTTTCAAATTCTTCACCCCAA 457141 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 || | ||| ||||||||||| |||||||||| || ||| | || || || || Sbjct 457140 GATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTGTTTATTTTCTTTA 457081 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATAT 38076 || | | ||||||||||||||||||||||| ||| ||||||||| | ||| || Sbjct 457080 ACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAATCACGAGCTCTTAAT 457021 Query 38077 TCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCATGGT 38136 ||||| || || ||| |||||||| || ||| || || ||||||| ||||||||| Sbjct 457020 TCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAGAGTGCCATGGC 456961 Query 38137 TCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACT 38196 || ||||| | | | | ||| |||||| | || || |||| | |||||| || Sbjct 456960 TCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGATCTACATATCTTGCT 456901 Query 38197 GTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGGAT 38256 || | |||| | | ||||||||| || |||| ||||| ||| | || || | || Sbjct 456900 GTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATACCATTAGTTCCTCTA 456841 Query 38257 ATATAAGTACCCTTAGCTCGTATATTACTTAT-CGACAA-TCCTATTCCACCTGCATGTT 38314 ||||||| | | |||| |||| ||| | | ||| ||||| || ||||| |||| Sbjct 456840 ATATAAGAATTTTGTCCTCGAATAT--CTTGTACAGCAACACCTATACCTCCTGC-TGTT 456784 Query 38315 TTGAT-ATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTT 38373 || | || || || ||||| ||||| || ||||||||||||||||| ||| || Sbjct 456783 TTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATCAGATTTC 456724 Query 38374 ATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTA 38433 |||| || || |||||| ||||||||| || ||| ||||| | |||||||||||| Sbjct 456723 ATTGATAATAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTA 456664 Query 38434 GGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCT 38493 |||| ||||| | || |||||| |||| ||| || ||||||| | | || Sbjct 456663 GGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCTAAAGCTTTTTCA 456604 Query 38494 ATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTATT 38553 |||||| | || || |||| |||||| ||||||| | |||||| || | ||| || Sbjct 456603 ATATCATCAATATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGGACGTTCAATA 456544 Query 38554 ATTTTATTATT-CTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACT 38612 ||||||||||| | ||| || || || | ||||||||||| | |||||||||| Sbjct 456543 ATTTTATTATTAATACGTAA-TAAGTAAGACCTCTCTAATGTTTTAAATCCAAAATAATC 456485 Query 38613 ATATGAATAATCTCTATCGTATGCTATTACATTATCGATTATATCTCTATGTT 38665 ||| | ||||||| || ||||| | |||| | |||| |||||| Sbjct 456484 ATAATTAAAATCTCTTGTATAATCTATTTCTTTATTTAAACGATCTTTATGTT 456432 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 |||||||| ||||| |||| || | ||| | || ||||| | ||| || ||| ||| Sbjct 458520 TCAACTGTAAATTTAATAGCATCCGTTGCTGCTTGAGTTCTTAAATAGTATGCTCCGGTT 458461 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 |||| || | ||||||||||||||||||||||| | ||||||| ||||||| || Sbjct 458460 TTTAAACCTTTTTCCCATCCGTAAAAATGCATACTGGATAATTTTGCGAATGTAGGTTTT 458401 Query 36910 TCTATATATATTGTCATTGATTGA 36933 | ||| || || | | ||||||| Sbjct 458400 TGTATGTAAATGTTTAATGATTGA 458377 >seq4 Length=1653377 Score = 275 bits (304), Expect = 6e-69 Identities = 657/969 (68%), Gaps = 26/969 (3%) Strand=Plus/Minus Query 11245 atta-aattatttattcaac-tttataaaaattat---taattaaaaatctatatccgta 11299 |||| |||| ||||| |||| ||| || ||||| | |||||||||| | | | Sbjct 1529849 ATTATAATTTTTTAT-CAACATTTTTATGTATTATATTTTCTTAAAAATCTGTGTTTAAA 1529791 Query 11300 gaaaata--tattCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTC 11357 ||||||| | |||| |||||| |||||| || |||||||| || ||||| Sbjct 1529790 GAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTG-AT-TTTTGATAATCTGCAACTC 1529733 Query 11358 GTCGTTCGAAAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGAT 11417 ||| || ||||| || || |||| || ||||| | ||||| | ||||| |||| Sbjct 1529732 TCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAAGTCCATCCAACTAAATGGAT 1529673 Query 11418 TATATACATTGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATT 11477 | | | || ||| ||||| ||||||||| | |||||||| ||| || || |||| Sbjct 1529672 TTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAATAATCGATCAGCAACAAATT 1529613 Query 11478 CTATATACTGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTG 11537 | ||||| |||||||| | | ||||||| || || | ||| || | || | | Sbjct 1529612 CGATATATTGAGACATAAGTCTTGAATTCATTCCAATTAAATCACAAGGTAAAG--ATTC 1529555 Query 11538 TCAAA-AACTCCT-TTTCTATATTAACCGCATCAATGATTATCGACGTT--ATAACTTCC 11593 |||| || | | |||||| | ||| || || | | ||| | || | ||| || Sbjct 1529554 ACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT--ATTTTGAACAACCTCT 1529497 Query 11594 TTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCT 11653 | | | | || | ||| || | |||||||| |||||| ||||| ||| Sbjct 1529496 TCTGGTAATTTATTTTCTAACAAGCTATAAATTAAACAATTAAAATCGGTGTGTAATCCT 1529437 Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCA-TCAATCCTCGtttttt 11712 || || ||||| |||| ||||||| ||||||||| || | | | || | ||||||| Sbjct 1529436 TCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTAATTTATTTT-GTTTTTT 1529378 Query 11713 tATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGC 11772 | ||||||||| ||| ||| ||| ||| |||||||| || ||| |||| || Sbjct 1529377 AAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTTCGACACATGCATTAGC 1529318 Query 11773 TACTACTCTTTCTCCATAT-ACCTTGTTGCTAGATATCCATTTTCTGGCCCAATCAGCTT 11831 ||| | |||||| || | | |||| | | |||||||| ||||| |||| Sbjct 1529317 TACAATTCTTTCAGCAAAAGAATTTGTATC-ATTGATCCATTTAGCTGCCCATAATGCTT 1529259 Query 11832 TCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATTAT 11891 | ||||||| | || |||| ||||| | |||||||| | | ||| | | || Sbjct 1529258 TATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCTTTCTCAT 1529199 Query 11892 CTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTA 11951 | | | ||| |||| |||||||||||||| |||| ||||| |||||||| | ||||| Sbjct 1529198 CCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTA 1529139 Query 11952 TTTGAAATCCATAGAAACATCGTGCCTCTGAACACT-GTACATCCACATAAAATCTTTCC 12010 ||||||| ||| ||| | || || | | | |||| || | ||||| || | Sbjct 1529138 TTTGAAAAGAATA-AAATTTTTTGGCTTCAATTATTTGTACCTCT-CTTAAAAATTTACT 1529081 Query 12011 -GCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTAT 12069 || ||||| || ||| || |||||||||| |||||||||||||| | ||||||||| Sbjct 1529080 AGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTAT 1529021 Query 12070 AAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTAC 12129 ||| | |||||| | | | ||||||| || | || | ||||| |||||||||||| Sbjct 1529020 AAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTAT 1528961 Query 12130 TTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATA 12189 |||||| | |||||||| || | | || |||||| | ||||| | ||| |||| Sbjct 1528960 CTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACCTCAGGATA 1528901 Query 12190 CTTAATAGG 12198 | ||||||| Sbjct 1528900 CATAATAGG 1528892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524513028560