Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq8 408 6e-109 seq4 172 7e-38 >seq8 Length=956651 Score = 408 bits (452), Expect = 6e-109 Identities = 1008/1509 (67%), Gaps = 39/1509 (3%) Strand=Plus/Minus Query 65168 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 65227 ||| ||||| || || |||||| ||| || || | | | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 65228 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 65287 ||| ||||| | || ||||||||||| |||||||| | |||||| || || |||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 65288 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 65347 ||| | | | | |||||| | || | | || ||||| | ||||| ||||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 457802 Query 65348 ATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 65404 || |||| | ||| | ||||| || || || || Sbjct 457801 ATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGCT 457742 Query 65405 GGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAACT 65461 || | || | ||| ||||| || ||||| || || ||| | |||| |||| || Sbjct 457741 TGCTGGACTA-CCTTGATATGATTCATATGGGCCATTTACTTGT--GCTAATTCA--AC- 457688 Query 65462 CGCC---TCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGTG 65517 || | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| | Sbjct 457687 CGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAG 457629 Query 65518 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 65577 ||||| ||| ||||||| |||| || ||||| | |||||||||||||| || | Sbjct 457628 CTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTC 457569 Query 65578 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 65637 | || || |||||||||||||| ||||| || ||||||||||| ||| || ||||||| Sbjct 457568 CTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAAT 457509 Query 65638 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 65697 | | || |||||||||| | |||||| ||| | ||| | ||| | | ||| Sbjct 457508 TTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTATAATTTTT 457449 Query 65698 GAAAATCAAA-----TCGCTCATCTAT-TACAAACATGTTCAATGCAACAGATGCCAGAT 65751 ||||| ||| | | ||||| ||||| | ||||||| || || |||| Sbjct 457448 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGAT 457389 Query 65752 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 65811 ||||||| ||||| |||| || | ||||| || || ||| || | |||||||| Sbjct 457388 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTAC 457329 Query 65812 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 65871 | || || || |||||||||| ||||||| || ||||| ||||| ||||| | | Sbjct 457328 ATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACA 457269 Query 65872 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 65931 | |||| |||||||||||| || || || || || ||| | || | || Sbjct 457268 TATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAA 457209 Query 65932 TTATTATAGATTTGTATCT--CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 65989 | | | ||| || || |||||| ||| ||| |||||| ||| ||| || || Sbjct 457208 GAACTGT--TTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAAATTC 457151 Query 65990 GTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 66048 || |||| || ||| | || || |||||||||| |||||||| || | ||| | | Sbjct 457150 TTCACCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTGTT 457092 Query 66049 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTC 66108 | || || || | |||||||| | |||||| | ||| | ||| ||||||||| | Sbjct 457091 TATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAATCAC 457032 Query 66109 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAT 66168 | ||| ||| || || || ||| ||| | | ||| | || | | ||||||| Sbjct 457031 GAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAG 456972 Query 66169 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 66228 | ||||| || || | |||| || | | || | ||| || || ||||||| Sbjct 456971 AGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGATCTA 456912 Query 66229 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 66288 ||||| || || | |||| ||||||| |||||||||| | ||||| ||| |||||| Sbjct 456911 CATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATACCAT 456852 Query 66289 TGGTCCCGGAGATAT-AGCTTCCACTTG--CACGAATATTACTAATTGATAGACCTATTC 66345 | || || |||| || | ||| | ||||||| | | | |||||| | Sbjct 456851 TAGTTCCTCTAATATAAGAAT---TTTGTCCTCGAATATCTTGTACAGCAACACCTATAC 456795 Query 66346 CCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATAC 66405 | ||||| ||||| ||| ||||| ||| | ||||| || ||| | || || ||||| Sbjct 456794 CTCCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTG 456735 Query 66406 TATCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 66464 |||| ||| || ||| || |||||| |||||||||| | | ||||||| | Sbjct 456734 AATCAGATTTCATTGATAA-TAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAA 456676 Query 66465 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCA 66524 |||||||| ||||||| ||| || ||||| |||||| ||| | || || ||| || || Sbjct 456675 TTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCT 456616 Query 66525 ATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 66583 | |||| || ||||| || | ||| ||||||| | || | |||||| | || || Sbjct 456615 AAAGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTG 456557 Query 66584 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 66643 ||| | ||||| || || || || || || ||||| || | || || |||||||| Sbjct 456556 AGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAAA 456497 Query 66644 ACCAAAATA 66652 |||||||| Sbjct 456496 TCCAAAATA 456488 >seq4 Length=1653377 Score = 172 bits (190), Expect = 7e-38 Identities = 375/556 (67%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 36164 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 36223 |||||| ||||| || || || |||||||||||||| || ||| || | || | Sbjct 1529454 AAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGT 1529395 Query 36224 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 36283 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1529394 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1529335 Query 36284 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 36343 || || ||| || | || ||| || || || | |||| ||||| || Sbjct 1529334 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTGATCCATTTA 1529275 Query 36344 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 36403 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1529274 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1529215 Query 36404 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 36463 | || || ||| |||| ||| ||||||| || | |||||| |||| ||||| Sbjct 1529214 AACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGT 1529155 Query 36464 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 || ||||||| || |||||||| || || | | || || | || ||||| ||| Sbjct 1529154 ATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCT 1529095 Query 36524 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 36582 | ||||| | || || |||||||| |||||||| ||||| ||||||||||| || Sbjct 1529094 CTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1529036 Query 36583 CAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAA-TCATTGATAT 36641 || |||||||||||||||| |||||| ||| ||| ||| ||| || || || | || Sbjct 1529035 TAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1528977 Query 36642 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 36701 | | |||| ||| | ||||| | ||||||||||| || || || |||||||| | || Sbjct 1528976 CACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAAT 1528917 Query 36702 TCCAGATGTCATGATA 36717 |||| | ||| |||| Sbjct 1528916 TCCATACCTCAGGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172396869160