Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq8 479 4e-130 seq4 163 4e-35 >seq8 Length=956651 Score = 479 bits (530), Expect = 4e-130 Identities = 1031/1510 (68%), Gaps = 41/1510 (3%) Strand=Plus/Minus Query 79047 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 79106 ||| ||||| || || |||||| ||| || || | | | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 79107 ATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGG 79166 ||||||||| | |||||||||||||| |||||||| | |||||| || ||||||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 79167 TGCCACCAATAAACTATTTCTAAGACCGTATG-AT-CTGATTTTATCTTTTAGAGATTCC 79224 ||| | | | | |||||| | || ||| || || ||||| | ||||| | ||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCC--ATGCATACTTATTTTTTTTTTTAATAAATCC 457804 Query 79225 CAATCCCAAAGATCAGACGGGACAA---CATTCCAAAGATCATATTGTAGAATACCGTTA 79281 ||||||||| | | || ||||||| | |||| |||||| || || || Sbjct 457803 CAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTG 457744 Query 79282 CTAGC-GTATGATCCTGTGTATGTTTCATAAGGTCC--TTCCTTTTCGGCTAATTCACAA 79338 || || | | | | || |||| |||||| || || || ||| | ||||||||| | Sbjct 457743 CTTGCTGGACTACCTTGA-TATGATTCATATGGGCCATTTACTTGT--GCTAATTCA--A 457689 Query 79339 CTCGCC---TCTAATGCTCCGTAATAAATGGTTTCGAAAAT-CTTCTTATTGAGATCTTG 79394 | || | ||||| || | ||||| || ||||| || || ||||| ||| | |||| Sbjct 457688 C-CGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTT 457631 Query 79395 TGCTTC-TAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAA 79453 ||||| | | | ||| ||||||| |||| || ||||| | |||||||||||||| | Sbjct 457630 AGCTTCCTCAGAT-TCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTA 457572 Query 79454 CACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAAT 79513 | || || || |||||||||||||| ||||| || ||||||||||| ||| || |||| Sbjct 457571 CTCCTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAAT 457512 Query 79514 AATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGA-CCACATCCTTTAGT 79572 |||| | || |||||||||| | ||| || | || || ||| | | ||| | || | Sbjct 457511 AATTTCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCGTATAAT 457453 Query 79573 TTGAGAAAATCAAA-----TCGTCCATCTAT-TACAAACATGTTCAACGCGACAGATGCC 79626 || ||||| ||| | | ||||| ||||| | || || | || || Sbjct 457452 TTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCT 457393 Query 79627 AGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTA 79686 ||||||||||| ||||| |||| || | ||||| || |||||| || | ||| Sbjct 457392 AGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTA 457333 Query 79687 CTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAA 79746 ||||| ||||| || |||||||||| ||||||| || ||||| ||||| ||||| Sbjct 457332 CTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATAT 457273 Query 79747 AGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGA 79806 | || | || |||||||||||| || || || || || ||| | || | Sbjct 457272 AACATATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCATAAATCTTGT 457213 Query 79807 GCCTTTATTATAGACTTGTATCT--CTTTTCTCTTTCGTATTGTGTATATAATCGTTCGA 79864 || | | | || || || |||||| ||| |||| |||||||||| ||| | Sbjct 457212 GCAAGAACTGT--TTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAA 457155 Query 79865 ACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACT 79924 | || || |||||| || ||| || |||||||| | ||||||||| || | ||| | Sbjct 457154 ATTCTTCACCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGT 457095 Query 79925 CTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGAT 79984 | || || || || | |||||||| | |||||| | ||| | ||| ||||| || Sbjct 457094 GTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAAT 457035 Query 79985 CTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATAT 80044 | | | ||| || || || || ||| ||| | | ||| | || | | ||||| Sbjct 457034 CACGAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATAT 456975 Query 80045 CAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGAT 80104 |||| ||||| || || | |||| || | | || || ||| || || |||| Sbjct 456974 CAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGAT 456915 Query 80105 CTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTAC 80164 ||| ||||| || || | |||| ||||||| |||||||||| | ||||| ||| ||| Sbjct 456914 CTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATAC 456855 Query 80165 CATTGGTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATT 80223 |||| || || |||| || | | | ||||||| | | | |||||| Sbjct 456854 CATTAGTTCCTCTAATATAAGAATTTTGT-CCTCGAATATCTTGTACAGCAACACCTATA 456796 Query 80224 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATG 80283 || ||||| ||||| ||| ||||| ||| | ||||| || ||| | || || ||||| Sbjct 456795 CCTCCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATT 456736 Query 80284 CTATCATCAATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 80342 |||| ||| || ||| || |||||| |||||||||| | | ||||||| Sbjct 456735 GAATCAGATTTCATTGATAA-TAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGA 456677 Query 80343 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTC 80402 ||||||||| ||||||| ||| || ||||| |||||| ||||| || || ||| || || Sbjct 456676 ATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTC 456617 Query 80403 AATAGCTGATTCTATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCT 80461 | |||| ||| ||||| || | ||| ||||||| | || | |||||| | || | Sbjct 456616 TAAAGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTT 456558 Query 80462 GAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAA 80521 |||| | ||||| || || ||||| || || |||||||| | || || ||||||| Sbjct 456557 GAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAA 456498 Query 80522 AACCAAAATA 80531 | |||||||| Sbjct 456497 ATCCAAAATA 456488 >seq4 Length=1653377 Score = 163 bits (180), Expect = 4e-35 Identities = 331/485 (68%), Gaps = 6/485 (1%) Strand=Plus/Minus Query 50038 TTTTTAAGCCAAAATATGGACGCAAATGAC--CCAGAAAAGAAGATTCCTTCTACTGCGG 50095 ||||||| ||||||||| | | |||| || ||| ||| || |||||||| || | Sbjct 1529382 TTTTTAAACCAAAATATTG-CACAAAA-ACTTCCACTAAATAATATTCCTTCGACACATG 1529325 Query 50096 CAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTATCCACTTTTGAGCCCAAT 50155 || || |||| ||| || || || | |||| ||||| || ||||| Sbjct 1529324 CATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTGATCCATTTAGCTGCCCATA 1529265 Query 50156 CGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCAT 50215 || || ||||||| || || |||| || |||| ||| | || | || | Sbjct 1529264 ATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTTAACCTCTCTT 1529205 Query 50216 TACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAA 50275 | ||| |||| |||| |||| || || | |||||| |||| ||||| || ||||||| Sbjct 1529204 TCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTTCAA 1529145 Query 50276 TGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATC 50335 || || ||||| || || | | || || | || || || ||| | ||||| Sbjct 1529144 CAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCTCTTAAAAATT 1529085 Query 50336 GTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTT 50395 ||| |||||||| |||||||| ||||| ||||||||||| || || ||||||| Sbjct 1529084 TACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTT 1529025 Query 50396 TTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATA 50454 |||||||||||||||| || ||| ||| ||| || || || | ||| | |||| | Sbjct 1529024 TTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAA 1528966 Query 50455 TCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 50514 |||| ||||| | ||||||||||| || || || |||||||| | |||||| | ||| Sbjct 1528965 TCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCATACCTCA 1528906 Query 50515 TGATA 50519 |||| Sbjct 1528905 GGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268360060360