Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 251 7e-62 >seq4 Length=1653377 Score = 251 bits (278), Expect = 7e-62 Identities = 610/905 (67%), Gaps = 33/905 (4%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13583 |||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1529808 TAAAAATCTGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1529749 Query 13584 TGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13643 ||||| || |||||| ||||||||||| || ||||| |||| | ||||| ||| Sbjct 1529748 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAAGTCC 1529689 Query 13644 ATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAG---TTCTAATAGT 13700 || || |||||||||| |||| || |||||| |||||||| |||||||| Sbjct 1529688 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAATA-- 1529631 Query 13701 AATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAG 13759 ||| |||||||| ||| || |||||||||||||| || || ||||||| || |||| Sbjct 1529630 -ATCGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1529573 Query 13760 TTTTACAGGAATTATATTGGTTAA-AAATTCTTTTTCTATAGACACAGCCTCTTTTATAA 13818 | ||| | | ||| || |||| | |||||| || || ||||| | | Sbjct 1529572 ATCACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1529514 Query 13819 TAATTGTAATAATCTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACG 13875 || || || || ||| | | | | |||||| | | | | | |||||||||| Sbjct 1529513 TATTTTGAACAACCTCTTCTG--GTAATTTATTTTCTAACAAGCT-ATAAATTAAACAAT 1529457 Query 13876 CAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-T 13934 |||||| || | || ||||| |||||||| | ||| || ||||||||| || | Sbjct 1529456 TAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1529397 Query 13935 GGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATT 13994 | || || | ||||||| ||||||||||||||| ||| || ||| |||||| Sbjct 1529396 GTAATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATT 1529338 Query 13995 CCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT--A 14052 || || || ||| |||| | || ||| |||| || ||||| || | Sbjct 1529337 CCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAA-----TTTGTATCATTGA 1529283 Query 14053 TCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAA 14112 ||||||| |||||| | ||| ||||| || || |||||||||||| || Sbjct 1529282 TCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAA 1529223 Query 14113 ATAAATATTCCTTCTCTT--TAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 |||||| | | |||||| | | ||| ||| || ||||||| | ||| ||||| | Sbjct 1529222 ATAAATTTAACCTCTCTTTCTCATCCTT--AATATAATTATCAATTAATAAACTATATGT 1529165 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 |||||| ||||| ||||| | |||||| |||||| |||||| | | ||||| Sbjct 1529164 TTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTAT 1529105 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 |||||| || ||||| | ||||||||||| ||||| |||||||||||||| Sbjct 1529104 TTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGC 1529045 Query 14291 AAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA- 14348 ||||||||| || | | ||| ||||| | || || || | || | |||||| || Sbjct 1529044 AAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAG 1528987 Query 14349 TCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTT 14408 || ||||| | || | ||||| || ||| | |||||||| || |||||||| Sbjct 1528986 TCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTT 1528927 Query 14409 TTATA 14413 ||||| Sbjct 1528926 TTATA 1528922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479727706166600