Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4 226 3e-54 >seq4 Length=1653377 Score = 226 bits (250), Expect = 3e-54 Identities = 604/903 (67%), Gaps = 29/903 (3%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTT 13371 |||||||| | ||| ||||| || | || | | | | || ||||| || |||| Sbjct 1529808 TAAAAATCTGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTGATTTT 1529749 Query 13372 TGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCC 13431 ||||| || |||||| |||||||| || || ||||| |||| | ||||| ||| Sbjct 1529748 TGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAAGTCC 1529689 Query 13432 ATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAATAAT 13491 || || ||||||||| |||| || |||||| |||||||| | ||||||| Sbjct 1529688 ATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAATAAT 1529629 Query 13492 CTATCAGCAATAAACTCAATATATTGAGACATTAAATCAC-AATTCATACCTATTAGTTT 13550 | |||||||| ||| || |||||||||||||| || || ||||||| || |||| | Sbjct 1529628 CGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAAATC 1529570 Query 13551 TACAGGAATTATATTAGTTAA-AAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAA 13609 ||| | | ||| || |||| | |||||| || || || || | ||| Sbjct 1529569 ACAAGGTAA-AGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTATAT 1529511 Query 13610 TCTTAATAATGTCATTAGAAGGAGGATATTTT---AGATGTTTAAAAATTAAACACGCAA 13666 | | || || || | | | | |||||| | | | | | |||||||||| || Sbjct 1529510 TTTGAACAACCTCTTCTG--GTAATTTATTTTCTAACAAGCT-ATAAATTAAACAATTAA 1529454 Query 13667 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC-TGGC 13725 |||| || | || ||||| |||||||| | ||| || ||||||||| || || Sbjct 1529453 AATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTA 1529394 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || || | ||||||| ||||||||||||||| || ||| ||| |||||||| Sbjct 1529393 ATTTATTTT-GTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1529335 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT--ATCC 13843 || || ||| |||| | || ||| |||| || ||||| | || |||| Sbjct 1529334 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAA-----TTTGTATCATTGATCC 1529280 Query 13844 ATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATA 13903 |||| |||||| | ||| ||||| || || |||| || |||| |||| Sbjct 1529279 ATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATA 1529220 Query 13904 AATGTTCCTTCTCTTTAGTA--CTTGAAATGTATGTATCAATAAGTAAGCTATACATTTC 13961 ||| | | ||||||| | ||| ||| || ||||||| | ||| ||||| |||| Sbjct 1529219 AATTTAACCTCTCTTTCTCATCCTT--AATATAATTATCAATTAATAAACTATATGTTTC 1529162 Query 13962 AGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTG 14021 ||| ||||| ||||| | |||||| |||||| |||||| | | ||||| ||| Sbjct 1529161 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTG 1529102 Query 14022 TACCTCCGAGTAAAATCTTTCT-GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAA 14080 |||||| ||||| || || ||||| ||||| || || |||||||||||||||| Sbjct 1529101 TACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAA 1529043 Query 14081 AAAATGCCAATATGTTTTTAATAAAGTATTGCTC-TTCATTGTTGAGTTTTTTCCAA-TC 14138 ||||||| || | | ||| ||||| | || || || | || | |||||| || || Sbjct 1529042 AAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAA--TTTTTCAAAGTC 1528985 Query 14139 GGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTT 14198 ||||| | || | ||||| || ||| | |||||||| || |||||||||| Sbjct 1528984 TTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTT 1528925 Query 14199 ATA 14201 ||| Sbjct 1528924 ATA 1528922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478588506864360