Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8 441 1e-118 seq4 168 9e-37 >seq8 Length=956651 Score = 441 bits (488), Expect = 1e-118 Identities = 1013/1505 (67%), Gaps = 31/1505 (2%) Strand=Plus/Minus Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 71189 ||| ||||| || || |||||| ||| || || | | | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 71190 ATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249 ||| ||||| | || ||||||||||| |||||||| | |||||| || || |||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 71250 TGCCACCAATAGACTATTTCTAAGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCA 71309 ||| | | ||| |||||| | ||||| | ||||| | ||||| | ||||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 457802 Query 71310 ATTCCAA-AGATCCGATGGTACAA---CNNNNNNNNNNNNNNNNNNNNNNATGCCGTTAC 71365 || |||| | | || ||| | || || || | Sbjct 457801 ATCCCAATATTTATTATC-TACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGC 457743 Query 71366 TAGC-GTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTC 71424 | || | | | | || ||||| || ||||| || | | || |||| |||| || | Sbjct 457742 TTGCTGGACTACCTTG-ATATGATTCATATGGGCCATTTACTTGTGCTAATTCA--AC-C 457687 Query 71425 GCC---TCTAATGCTCCATAATAAATGGTTTCGAAAAT-CTTCTTATTGAGATCTTGTGC 71480 | | ||||| || ||||||| || ||||| || || ||||| ||| | |||| || Sbjct 457686 GACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAGC 457628 Query 71481 TTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCC 71540 |||| ||| ||||||| |||| || ||||| | |||||||||||||| || || Sbjct 457627 TTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 457568 Query 71541 AATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATT 71600 || || |||||||| ||||| ||||| || ||||||||||| ||| || |||||||| Sbjct 457567 TATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAATT 457508 Query 71601 AATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGA-CCACATCCTTTAGTTTGA 71659 | || |||||||||| | |||||| | || || ||| | | ||| | || ||| Sbjct 457507 TCTTTCAATAATTTTATCTAAATTTCT-AGTAATAATTTTAGTAATATCGTATAATTTTT 457449 Query 71660 GAAAATCAAA-TCTCCCATCTAT-TACAAACACGTT----CAAGGCAACAGATGCCAGAT 71713 ||||| ||| ||| | | | || |||| || || |||| || || |||| Sbjct 457448 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGAT 457389 Query 71714 TACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTAC 71773 ||||||| ||||| |||| || | ||||| ||||||||| || | |||||||| Sbjct 457388 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTAC 457329 Query 71774 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 71833 | || || || |||||||||| ||||||| || ||||| ||||| ||||| | | Sbjct 457328 ATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACA 457269 Query 71834 TAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 71893 || | || |||||||||||| || || || || || ||| | || | || Sbjct 457268 TATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAA 457209 Query 71894 TTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGT 71953 | | | || || | |||||| ||| |||| |||||||||| ||| || || | Sbjct 457208 GAACTGTTTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAAATTCTT 457149 Query 71954 CTCCCCAAGCATTGTC-TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCA 72012 | ||||||| ||| | ||| || ||||||||||| |||||||| || | ||| | | | Sbjct 457148 CACCCCAAG-ATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTGTTTA 457090 Query 72013 TCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTG 72072 | || || || | |||||||| | |||||| | ||| | ||| ||||| ||| | Sbjct 457089 TTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAATCACGA 457030 Query 72073 GTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAA 72132 | ||| || || || || ||| ||| | | ||| | || | | ||||||||| Sbjct 457029 GCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAGAG 456970 Query 72133 TGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATG 72192 ||||| || || | |||| || | | || | ||| || || ||||||| Sbjct 456969 TGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGATCTACA 456910 Query 72193 TATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTG 72252 ||||| || || | |||| ||||||| |||||||||| | ||||| ||| |||||| Sbjct 456909 TATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATACCATTA 456850 Query 72253 GTCCCGGAGATAT-AGCTTCCACTGGCACGAATATTGCTAATTGATAGACCTATTCCCCC 72311 || || |||| || | | | ||||||| | | | |||||| || || Sbjct 456849 GTTCCTCTAATATAAGAATTTTGT-CCTCGAATATCTTGTACAGCAACACCTATACCTCC 456791 Query 72312 TGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATC 72371 ||| ||||| ||| ||||| ||| | ||||| || ||| | || || ||||| ||| Sbjct 456790 TGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAATC 456731 Query 72372 ATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAA 72430 | ||| || ||| || |||||| |||||||||| | | ||||||| ||||| Sbjct 456730 AGATTTCATTGATAA-TAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAATTAA 456672 Query 72431 ATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAG 72490 |||| ||||||| ||| || ||||| |||||| ||||| || || ||| || || | || Sbjct 456671 ATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCTAAAG 456612 Query 72491 CTGATTCTATATC-CCATTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGT 72549 || ||| ||||| || | ||||||||||| | || | |||||| | ||| ||||| Sbjct 456611 CTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTGAGGA 456553 Query 72550 CTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCA 72609 | ||||| || || ||||| || || ||||| || | || || |||||||| ||| Sbjct 456552 CGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAAATCCA 456493 Query 72610 AAATA 72614 ||||| Sbjct 456492 AAATA 456488 >seq4 Length=1653377 Score = 168 bits (186), Expect = 9e-37 Identities = 372/555 (67%), Gaps = 2/555 (0%) Strand=Plus/Minus Query 42071 AAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 42130 |||||| ||| | || ||||| |||||||||||||| || ||| || | || | Sbjct 1529454 AAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGT 1529395 Query 42131 ATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCT 42190 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1529394 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1529335 Query 42191 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTATCCACTTT 42250 || || ||| || | || ||| || || || | |||| ||||| || Sbjct 1529334 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTGATCCATTTA 1529275 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 ||||| || || ||||||| || || |||| || |||| ||| | || Sbjct 1529274 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1529215 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGA 42370 | || || ||| |||| ||| |||| || || | |||||| |||| ||||| Sbjct 1529214 AACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGT 1529155 Query 42371 ATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 || ||||||| || || ||||| || || | |||| || | | ||||| ||| Sbjct 1529154 ATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCT 1529095 Query 42431 GTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCC 42490 | ||||| ||| |||||||| |||||||| ||||| ||||||||||| || Sbjct 1529094 CTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCT 1529035 Query 42491 AATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAA-TCATTGATATC 42549 || |||||||||||||||| |||||| | ||||||| ||| || || || | ||| Sbjct 1529034 AACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATC 1528976 Query 42550 TTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATT 42609 | |||| ||||| ||||| | ||||||||||| ||||| || |||||||| | ||| Sbjct 1528975 ACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATT 1528916 Query 42610 CCAGATATCATGATA 42624 ||| | ||| |||| Sbjct 1528915 CCATACCTCAGGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671138788927240