Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8 141 9e-29 seq5 98.7 1e-15 >seq8 Length=956651 Score = 141 bits (156), Expect = 9e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| ||| | ||||||||||| | ||| |||||||||||||| || ||||| Sbjct 415511 CCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGAT 415452 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| | |||||| |||||| | || | | ||||||||| || || Sbjct 415451 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 415392 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || |||||||| || ||||||| ||| | | ||| | || || | ||||| || Sbjct 415391 ATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGACA 415332 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCT 143188 |||| ||| | || || || || |||||||||||||| ||||||||| || Sbjct 415331 TCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCATACCT 415281 >seq5 Length=1684710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || ||||||||||| ||||| || || | || || ||||| Sbjct 156744 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 156685 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| |||||| | || | | ||| ||||| || || || |||||||| || Sbjct 156684 AATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 156625 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 |||||| ||| | | ||| | || || | ||||| || |||| ||| | || || Sbjct 156624 ATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTT 156565 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| ||||||||||| || |||||||| Sbjct 156564 CCGGTTAATGTTTTTACAAAGATTTGCAT 156536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014089453680