Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq8 140 2e-28 seq5 125 5e-24 >seq8 Length=956651 Score = 140 bits (154), Expect = 2e-28 Identities = 170/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || ||||| ||||||||||||||||| | || || ||||||||||| || ||||| | Sbjct 415511 CCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGAT 415452 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | |||| | |||||||||||||| ||||| | || || | ||| || || ||| Sbjct 415451 AATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGG 415392 Query 15257 ATTCCTTCTTTGTCACAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 || |||||||| || |||||| ||| || ||| |||| || ||||| ||| || Sbjct 415391 ATACCTTCTTTATCTTGAATTTTTGCT-TTAACATTTTCAATAGTATCAGATGGTTCGAC 415333 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 ||| | || || ||||| ||||| | |||||||| |||||||||||| Sbjct 415332 ATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCATA 415284 Score = 82.4 bits (90), Expect = 6e-11 Identities = 120/167 (72%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 15173 TCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTAT 15232 |||||||||||||| || || || |||| | |||||||||||||| ||||| | Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAA 414790 Query 15233 ATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTC-ACAAATTTTGCTCTTTACAAT 15291 || || | ||| || || |||||| |||||||| || || ||||||| || ||| | Sbjct 414789 ATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCT-TTAACATT 414731 Query 15292 TTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTG 15338 ||| || ||||| ||| ||||| | || || ||||| |||| Sbjct 414730 TTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTG 414684 >seq5 Length=1684710 Score = 125 bits (138), Expect = 5e-24 Identities = 172/237 (73%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| | ||| || |||||||| ||||| || || || | |||| | |||||| Sbjct 156744 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 156685 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 |||||||| ||||| | || || | |||||| || |||||||||||||| || Sbjct 156684 AATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 156625 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||| ||| || ||| |||| || ||||| ||| ||||| | ||||| ||||| Sbjct 156624 ATTTTTGCT-TTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTT 156566 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAAA--TAAAATTTTAATACTT 15388 || || | ||||||||||| |||||||| || | ||| ||||| | |||| || Sbjct 156565 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAATGTAAAAAGTAAATAATT 156509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362178983711109