Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4 244 9e-60 >seq4 Length=1653377 Score = 244 bits (270), Expect = 9e-60 Identities = 610/913 (67%), Gaps = 25/913 (3%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGA--CATAACAGACATT 12859 ||||||||| | | || ||||||||| | || | || ||||| ||||||| | Sbjct 1529809 TTAAAAATCTGTGTTTAAAGAAAATACTTGTTCTT--TTCTTTGAGCCATAACACCTGAT 1529752 Query 12860 TTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTT 12919 |||||||| || |||||| |||||||| || ||||||||||||| |||||| || Sbjct 1529751 TTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAAG 1529692 Query 12920 TCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAAC 12979 ||||| || || |||||||| ||| | ||| ||| ||||| | ||| Sbjct 1529691 TCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAAT 1529632 Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCAC-AGTTCATTCCTATTAA 13038 |||| ||||||||||| || || || || ||| || || | |||||||| ||||| Sbjct 1529631 AATCGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTAA 1529573 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 | ||| | || ||| | ||| | |||||| ||||||||||| ||||||| Sbjct 1529572 ATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTAT 1529513 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAG-ATGCTTAAACATCATACATGCAA 13157 | | | || | ||| | |||| || | ||| || || | ||| || Sbjct 1529512 ATTTTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCTATAA-ATTAAACAATTAA 1529454 Query 13158 AATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCA 13217 |||| ||| ||||||||||| ||||| |||| || || |||||||| ||| | | Sbjct 1529453 AATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGTA 1529394 Query 13218 TAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTT 13277 | ||||||||| ||||||||| ||| ||| || ||| |||||||||| Sbjct 1529393 ATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCTT 1529334 Query 13278 CAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCACT 13337 | || |||| |||| | |||||| || | | | ||| || | ||||| | Sbjct 1529333 CGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAA---TTTGTATCATTGATCCATT 1529277 Query 13338 TTCTGGCCCAGTTTGCTTT-TTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | ||||| |||||| || |||| || | | |||||||| || || | ||||||| Sbjct 1529276 TAGCTGCCCATAATGCTTTATTTTTTATTGCTGGT-ATATTTTCAATAGCATGAAATAAA 1529218 Query 13397 TAAtttttttCCTTACTGTCTAA-----AATATAAGTATCTATCAATAAGCTATACATTT 13451 | || ||| || ||| | ||||||| |||| || ||||| ||||| ||| Sbjct 1529217 T-----TTAACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTT 1529163 Query 13452 CTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCT 13511 | ||||| |||||||| | |||||||| ||| |||||| | | || || || | Sbjct 1529162 CAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTT 1529103 Query 13512 GAACTTCGGAGTAAAATCTTTCT-GCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCa 13570 | || || ||||| || || || || ||||| ||||| || |||||||| ||| Sbjct 1529102 GTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCA 1529044 Query 13571 aaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAACTTTAACCAATCT 13630 ||||| || | | || || ||||| | |||||| ||| | || ||| | ||| Sbjct 1529043 AAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTTTTCAAAGTCT 1528984 Query 13631 GGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTA 13690 ||||| |||||||||||| ||| ||| | |||||||| || || |||| || ||| Sbjct 1528983 TTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTA 1528924 Query 13691 TACATCATCCATA 13703 || | |||||| Sbjct 1528923 TAAAAATTCCATA 1528911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430982142622698