Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq10 210 3e-49 seq11 190 2e-43 seq13 93.3 5e-14 >seq10 Length=766960 Score = 210 bits (232), Expect = 3e-49 Identities = 408/602 (68%), Gaps = 19/602 (3%) Strand=Plus/Plus Query 164392 AATTGGAATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTC 164451 |||| |||||||||||| | || |||| | | ||||| ||| ||| || || Sbjct 710824 AATTTTAATTTTGAAGAATTAGGTATAGGAGCATTAGATGAAGAGTTTAAAACAATATTT 710883 Query 164452 AGACGAGCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAA 164511 ||| || ||||||| |||| | ||| | | ||||||||| | ||||| || Sbjct 710884 AGAAGAACATTTGCAAGTAGAATATATCCAAATTATATAATAAAACAGTTAGGAATAAAG 710943 Query 164512 CATATAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGA 164571 ||| | || || || ||||| |||| ||||||||| |||||||||||||| ||| || Sbjct 710944 CATGTGAAGGGTATGATATTATATGGTCCTCCTGGTACTGGTAAAACATTAATAGCTAGA 711003 Query 164572 TGCATTGCTCAAGCTTTTAAATC--GCGACCCGTTAAAATTGTTAATGGTCCTGAATTAT 164629 || | | || | || || | | || || ||||||| | ||||| |||||| ||| Sbjct 711004 CAAATAGGTAAAACATTAAATGCAAGAGAACC--TAAAATTATAAATGGGCCTGAAATAT 711061 Query 164630 TGAACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAG 164689 | || |||||||||||| | || |||| ||| || | || || ||| | ||||||||| Sbjct 711062 TAAATAAATATGTAGGTCAATCTGAAGAAAATATTCGTAATTTATTTAAAGAGGCTGAAT 711121 Query 164690 AAGAACAAAAGAAAGCAGGTTTAGCTAGTAAATTACATGTTATTGTTTTTGATGAGATAG 164749 ||| | || || | ||| | | ||||||| |||| | || |||||||||| Sbjct 711122 TGGAATATAAACAATCTGGTGAAAATTCATTATTACATATTATAATATTAGATGAGATAG 711181 Query 164750 ATGCTCTTTG----CAAAAA-----------ACGTGGTGATAATATTATTCATGATGCAG 164794 |||| |||| |||| | | | ||| | | | ||||| Sbjct 711182 ATGCAATTTGTCGACAAAGAGGTAGTTCTGCATCTAGTGGGACAGGTGTAAATGATAGTA 711241 Query 164795 TGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTG 164854 | ||||| || || | || ||||||||||| ||| | ||||||||||| || | Sbjct 711242 TAGTTAACCAATTATTATCAAAAATAGATGGAGTAAATAGTTTAAATAATATACTATTAA 711301 Query 164855 TAGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAG 164914 | || ||||| || || |||||||||||||| || |||||| |||| ||| |||| | Sbjct 711302 TTGGAATGACAAATAGAATAGATTTAATTGATGAAGCATTATTAAGACCAGGTAGATTTG 711361 Query 164915 AATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTTAAAAGTTC 164974 |||| | || |||||| |||||| | |||||||| | ||||||| ||||| ||| Sbjct 711362 AATTACATATTGAAATATCATTACCAAATAAAGAAGGTAGAATTCAAATATTAAATATTC 711421 Query 164975 AT 164976 || Sbjct 711422 AT 711423 >seq11 Length=733468 Score = 190 bits (210), Expect = 2e-43 Identities = 401/586 (68%), Gaps = 19/586 (3%) Strand=Plus/Plus Query 6840 ATAAATATGAGCATCTCCTAGCGTATGAATAAATTCACCTGGTTTCATATCAACAGCTTG 6899 ||||| |||||||| ||||| ||| ||||||||| |||||| | || | |||| Sbjct 125978 ATAAACATGAGCATTTCCTAATACATGTATAAATTCAGCTGGTTGTAAATTACATACTTG 126037 Query 6900 AGCAATTAAATATGTTAATAATGCATAAGAAGCTACATTAAAAGGTACACCTAATCCCAT 6959 || || | |||||| |||| | ||| ||||| | |||||| || ||||| | || | Sbjct 126038 TGCTATCATATATGTAAATATAGAATAGGAAGCAATATTAAATGGAACACCAAGACCTAA 126097 Query 6960 ATCTGCTGATCTTTGATAACATTG-ACAAGATAAAATATTGTCTATAGCATAAAATTGAC 7018 ||| |||| |||||| ||| ||| ||||| | || | | |||||||||||| Sbjct 126098 ATCACAAGATCGTTGATA-CATAATACATGATAATTTTCCATCAAAAACATAAAATTGAC 126156 Query 7019 ACAATACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCA 7078 | || | |||||| |||||||| | ||||||| ||| | |||||| ||| || Sbjct 126157 ATAAAATATGACAAGGAGGTAATGCCATTTGATCTAAATCTTTTACATTCCATGCACACA 126216 Query 7079 TTAAAATACGTCTATCATTTGGATTTGTTTTTAATTTTGTT-ATAATTATTTGTAATTGA 7137 | ||| |||||| ||| | | | ||||||||| || ||||| ||| ||| ||| Sbjct 126217 AAATAATTCGTCTA-CATGTCGGATCATTTTTAATTAAATTGATAATATTTTTTAACTGA 126275 Query 7138 TCTATACCCTGACCTTCATAATTAGTATGACA-ATTTATATAATTAGCTCCAAAATGTCT 7196 || | ||| | | ||| ||||| || || ||| || | | || | ||| ||||| ||||| Sbjct 126276 TCAACACCTTTATCTTTATAATCAGCAT-ACATATCTGTGTATTCAGCACCAAAGTGTCT 126334 Query 7197 CCATTGAAACCCATAAATAGGACCTAAATCACCTTCTTCACGATG--ATTAAATCCTAAT 7254 ||||||||| ||||| || || ||||| ||| |||| | ||| || | ||||| | Sbjct 126335 CCATTGAAATCCATAGATCGGCCCTAAGTCATTAACTTCTCTATGAAATAATTTCCTATT 126394 Query 7255 CGATTTAAATTAGATTTTGATCCATAAGCATCCCAAATATGTACAGAtttttttGATAA- 7313 || |||| | ||| |||| ||| ||||| || |||| ||||| | |||| Sbjct 126395 --ATCTAAAAACTCTCTTGTCCCATTAGCTTCCCATATTCTTACATTTTTTTCTAATAAT 126452 Query 7314 --ATTTAAAGAATTTGTAGATCCTTTAAGGAACCATAAAAGTTCTTCTACTATTCCACGC 7371 |||| |||||| ||| | | |||||||| | ||||| | || || | Sbjct 126453 GTATTT---CCATTTGTTTCTCCCCTTATAAACCATAATAACTCTTCAATGATACCTCTT 126509 Query 7372 CAAAACATTCTTTTTGTAGTGAATAAAGGGA---ATGTACTTAAAT 7414 ||| | | ||||||| || ||||| |||| || |||||||| Sbjct 126510 ACAAATAATTTTTTTGTTGTTAATAATGGGAAATATTCACTTAAAT 126555 >seq13 Length=615600 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 19330 TAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTAC 19389 |||| | ||| || ||||| || |||||| |||| || ||||||||||| | Sbjct 433561 TAAAGTAAAAGTACGATCTGTTAGAATACCCCAAATTGGAGATAAGTTTGCAAGTAGGCA 433620 Query 19390 TGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGA 19449 || |||||||| ||| ||||| | ||| | ||||||||||| ||||| || Sbjct 433621 TGGACAAAAAGGTACAATCGGTATAACCTATAGAATGGAAGATATGCCATTTACATCTGA 433680 Query 19450 TGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 ||||| | | || ||| ||||||| ||||||||||| ||||| ||| ||||| Sbjct 433681 TGGTACATTTCCTGATATTATTATGAACCCACATGCAGTTCCATCTCGTATGAC 433734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871635028400