Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq8 129 5e-25 seq5 107 2e-18 >seq8 Length=956651 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC-GCT 94839 |||||||| |||| || || || || || || ||||| ||||| | |||||||| | | Sbjct 415511 CCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGAT 415452 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || | || | || || | |||||||| |||| ||||||||||||||||| || || Sbjct 415451 AATGTTCTTCCA-TCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 415393 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 ||||||||||| || | ||||||||| || || | | ||| |||| | ||||| Sbjct 415392 GATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGAC 415333 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| ||||| |||||||| || | ||||| || || || ||||| Sbjct 415332 ATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 102 bits (112), Expect = 7e-17 Identities = 123/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 94817 TCCTTTTGCACGTTATAATC-GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAA 94875 || ||||| | |||||| || | | || || || ||| || | |||||||| |||| Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAAT-GTTCTGCCATCTTCTAATTGTTTTCCAGCAAA 414791 Query 94876 GATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGC 94935 ||||||||||||||||| || |||||||||||||| || | ||||||||| || || Sbjct 414790 AATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATT 414731 Query 94936 GCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCC 94980 | | ||| |||| | ||||| |||| ||||| |||||||| Sbjct 414730 TTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCC 414686 >seq5 Length=1684710 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || || || ||||| ||||| | |||||| || | ||| || ||| || Sbjct 156744 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 156685 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | |||||||| |||| ||||||||||| ||||| || ||||| |||||||| || | Sbjct 156684 AATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 156625 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 |||||||| || || | | || || | | || || |||| || || |||||| Sbjct 156624 ATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTT 156565 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | ||||| |||||||| ||||| Sbjct 156564 CCGGTTAATGTTTTTACAAAGATTTGCAT 156536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290925421640