Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4 237 2e-57 >seq4 Length=1653377 Score = 237 bits (262), Expect = 2e-57 Identities = 622/943 (66%), Gaps = 29/943 (3%) Strand=Plus/Minus Query 21119 ATATTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttt-tttGA--CATA 21175 |||||| ||||||||| | | ||| |||||| | | | ||||||| ||||| |||| Sbjct 1529817 ATATTTTCTTAAAAATCTGTGTTTAA--AGAAAATACT-TGTTCTTTTCTTTGAGCCATA 1529761 Query 21176 ATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAAT 21235 | || |||||||||||| |||||| ||||| || |||||||| ||||||| || Sbjct 1529760 ACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAAC 1529701 Query 21236 GATATAGATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGT 21295 ||||| | ||||| || ||||||||||| || | || | |||| |||||| | Sbjct 1529700 GATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAA 1529641 Query 21296 TCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATA 21355 | |||||||| ||| || |||||||| ||||||||| |||| | | ||||||| Sbjct 1529640 CATTCTAATAATCGATCAGCAACAAATTCGATATATTGAGACATAAGTCTTGAATTCATT 1529581 Query 21356 CCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCA 21415 || || || | ||| | || || | ||| ||| |||||| || ||||| Sbjct 1529580 CCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCT 1529521 Query 21416 ACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAA-------- 21467 || ||||||| | | | | | || | || | | ||| | ||| Sbjct 1529520 TTAACTATATTTTGAA--CAACCTCTTCTGG-----TA-ATTTATTTTCTAACAAGCTAT 1529469 Query 21468 ACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAA 21527 | || ||||| |||||| || || |||||||||||||| |||||||||||| || Sbjct 1529468 AAATTAAACAATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAA 1529409 Query 21528 ATGTTAAACCGGGCA-TTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCT-CC 21585 |||||||||| | | || || | | ||||| ||||||||||||| | |||| || || Sbjct 1529408 ATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTG-CACAAAAACTTCC 1529351 Query 21586 TGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTC 21645 ||| || || || || || ||| || || | || |||| | | ||| | Sbjct 1529350 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAA---AGAATT 1529294 Query 21646 TTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATC 21705 | |||| |||||||| |||||||| ||| || | ||| || || | || Sbjct 1529293 TGTATCATTGATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTC 1529234 Query 21706 AATAGCTTTTAAAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNN 21765 |||||| | || | || | || | |||| | || Sbjct 1529233 AATAGCATGAAATAAATTTAACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAA 1529174 Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 |||||| ||||||||||||||||||| | ||||| ||||| ||||| | | || Sbjct 1529173 ACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGC 1529114 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 || ||| ||||| ||||| |||||| ||||| |||||||||||| Sbjct 1529113 TTCAATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATC 1529054 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTT 21945 ||| || ||||||||||| || | || ||||||||||| | ||| || | ||||||| Sbjct 1529053 ACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT 1528994 Query 21946 TTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAAT 22005 || | ||| ||||| |||||||||||| ||||||| |||||||| || Sbjct 1528993 TTCAAAGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTC 1528934 Query 22006 AGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGA 22048 ||| |||||||| | | |||| | ||| ||| || || ||| Sbjct 1528933 AGCTTTTTTATAAAAATTCCATACCTCAGGATACATAATAGGA 1528891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531900474210760