Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8 396 3e-105 seq4 156 5e-33 >seq8 Length=956651 Score = 396 bits (438), Expect = 3e-105 Identities = 1004/1507 (67%), Gaps = 35/1507 (2%) Strand=Plus/Minus Query 62324 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62383 ||| ||||| || || |||||| ||| || || | | | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 62384 ATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62443 ||| ||||| | || ||||||||||| |||||||| | |||||| || || |||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 62444 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62503 ||| | | | | |||||| | || | | || ||||| | ||||| ||||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 457802 Query 62504 ATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 62560 || |||| | ||| | ||||| || || || || Sbjct 457801 ATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGCT 457742 Query 62561 GGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAACT 62617 || | || | ||| ||||| || ||||| || || ||| | |||| |||| || Sbjct 457741 TGCTGGACTA-CCTTGATATGATTCATATGGGCCATTTACTTGT--GCTAATTCA--AC- 457688 Query 62618 CGCC---TCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGTG 62673 || | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| | Sbjct 457687 CGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAG 457629 Query 62674 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACAC 62733 ||||| ||| ||||||| |||| || ||||| | || ||||||||||| || | Sbjct 457628 CTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTC 457569 Query 62734 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62793 | || || |||||||||||||| ||||| || ||||||||||| ||| || ||||||| Sbjct 457568 CTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAAT 457509 Query 62794 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62853 | | || |||||||||| | |||||| ||| | ||| | ||| | | ||| Sbjct 457508 TTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTATAATTTTT 457449 Query 62854 GAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAAGGCAACAGATGCCAGAT 62907 ||||| ||| | ||||| ||||| | || |||| || || |||| Sbjct 457448 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGAT 457389 Query 62908 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62967 ||||||| ||||| |||| || | ||||| || || ||| || | |||||||| Sbjct 457388 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTAC 457329 Query 62968 ACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 63027 | || || || |||||||||| ||||||| || ||||| ||||| ||||| | | Sbjct 457328 ATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACA 457269 Query 63028 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 63087 | |||| |||||||||||| || || || || || ||| | || | || Sbjct 457268 TATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAA 457209 Query 63088 TTATTATAGATTTGTATCT--CCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63145 | | | ||| || || ||||| ||| ||| |||||| ||| ||| || || Sbjct 457208 GAACTGT--TTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAAATTC 457151 Query 63146 GTCTCCCCAAACATTGTC-CAATCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63204 || |||| || ||| | || || |||||||||| |||||||| || | ||| | | Sbjct 457150 TTCACCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTGTT 457092 Query 63205 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63264 | || || || | |||||||| | |||||| | ||| | ||| ||||| ||| | Sbjct 457091 TATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAATCAC 457032 Query 63265 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63324 | ||| ||| || || || ||| ||| | | ||| | || | | |||||||| Sbjct 457031 GAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAG 456972 Query 63325 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63384 | ||||| || || | |||| || | | || | ||| || || ||||||| Sbjct 456971 AGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGATCTA 456912 Query 63385 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCAT 63444 ||||| || || | |||| ||||||| |||||||||| | || ||||||||||||| Sbjct 456911 CATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATACCAT 456852 Query 63445 TGGTACCGGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCC 63503 | || || |||| || | | | ||||||| | | | |||||| || Sbjct 456851 TAGTTCCTCTAATATAAGAATTTTGT-CCTCGAATATCTTGTACAGCAACACCTATACCT 456793 Query 63504 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTA 63563 ||||| ||||| ||| ||||| ||| | ||||| || ||| | ||||| ||||| | Sbjct 456792 CCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAA 456733 Query 63564 TCATCGATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 63622 ||| ||| || ||| || |||||| |||||||||| | | ||||||| ||| Sbjct 456732 TCAGATTTCATTGATAA-TAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAATT 456674 Query 63623 AAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63682 |||||| ||||||| ||| || ||||| |||||| ||| | || || ||| || || | Sbjct 456673 AAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCTAA 456614 Query 63683 AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63741 |||| || ||||| || | ||| ||||||| | || | |||||| | || |||| Sbjct 456613 AGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTGAG 456555 Query 63742 GTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63801 | | ||||| || || || || || || ||||| || | || || |||||||| | Sbjct 456554 GACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAAATC 456495 Query 63802 CAAAATA 63808 ||||||| Sbjct 456494 CAAAATA 456488 >seq4 Length=1653377 Score = 156 bits (172), Expect = 5e-33 Identities = 212/291 (73%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 33564 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33623 ||| |||| |||| |||| || || | |||||| |||| ||||| || ||||||| || Sbjct 1529200 ATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGC 1529141 Query 33624 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTC 33683 || ||||| || || | | || || | || ||||| ||| | ||||| || Sbjct 1529140 TATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCTCTTAAAAAT--TTA 1529083 Query 33684 C--GCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTT 33741 | ||||||||||| |||||||| ||||| ||||||||||| || || ||||||||| Sbjct 1529082 CTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTT 1529023 Query 33742 ATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATATCTTTAGATATATC 33800 ||||||| |||||| | | ||| ||| ||| || || || | ||| | |||| ||| Sbjct 1529022 ATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAATCACTTGATAAATC 1528964 Query 33801 TACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCA 33851 || ||||| | ||||||||||| || || || |||||||| | ||||| Sbjct 1528963 TATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAATTCCA 1528913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622946818444840