Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq8 161 3e-34 seq11 152 1e-31 >seq8 Length=956651 Score = 161 bits (178), Expect = 3e-34 Identities = 599/931 (64%), Gaps = 16/931 (2%) Strand=Plus/Plus Query 363382 TATGATATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGAT 363441 |||||| ||| |||| ||| || | |||| || ||| ||| ||||| ||| | | Sbjct 456482 TATGATTATTTTGGATTTAAAACATTAGAGAGGTCTTACTTATTACGTATTAATAATAAA 456541 Query 363442 ATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGAT 363501 ||| ||||||| || || ||| | |||||| | || |||| || || ||| ||| Sbjct 456542 ATTATTGAACGTCCTCAACATTTATTAATGAGAGTATCTATAGGAATACATATTGATGAT 456601 Query 363502 GTTGATGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTAT---TCACGCACGCC 363558 |||| || | ||||| || | | ||| ||| || | || || || Sbjct 456602 ATTGAAAAAGCTTTAGAAACTTACCA---TTTAATGTCTCAAAAATATTTTACTCATGCT 456658 Query 363559 ACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTA 363618 || || ||| | | ||| | ||||| | | || || |||||||| || ||| | || Sbjct 456659 ACTCCTACATTATTTAATTCGGGAACACCAAGACCCCAAATGTCTTCATGTTTTTTATTA 456718 Query 363619 AAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATT 363678 |||||| ||||| || || ||||| ||||| ||| | ||| | ||||| | || Sbjct 456719 TCAATGAAATCTGATTCAATAGAAGGTATATTTGAAACATTAAAGCAATGTGCATTGATC 456778 Query 363679 TCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTAC 363738 || | ||||| || || ||||| | | || || |||| | ||| || ||| Sbjct 456779 AGTAAAACAGCAGGAGGTATAGGTGTTGCTGTACAAGATATTCGAGGACAAAATTCTTAT 456838 Query 363739 ATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAA 363797 ||| | || || | || ||| || |||||| | ||||| ||| | | || ||| | | Sbjct 456839 ATTAGAGGAACTAATGGTATA-TCAAATGGGTTAGTTCCAATGTTAAGAGTTTTTAATGA 456897 Query 363798 TACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCT 363857 ||| || || || || || || ||||| ||||| | ||||| | |||||| | ||| | Sbjct 456898 TACAGCAAGATATGTAGATCAAGGTGGCGGAAAAAGAAAAGGTTCTTTTGCTGTATATAT 456957 Query 363858 CGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA-CACGGGAAAAG 363916 ||||| || | ||||||||||| ||| | || | | ||||| ||| || |||| Sbjct 456958 TGAGCCATGGCACTCTGATATTTTTGAATTTTTAGATTTAAGAAAAAATCAC-GGTAAAG 457016 Query 363917 AGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGC 363976 | ||||| | || |||||| | || ||||| | ||||| |||| ||||||||| Sbjct 457017 AAGAATTAAGAGCTCGTGATTTATTTTATGCTATATGGGTACCTGATTTATTTATGAAGA 457076 Query 363977 GCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCG 364036 | || | | | ||| | ||| | | | || || | |||||||||||| | | Sbjct 457077 GGGTTAAAGAAAATAAACACTGGACTTTAATGTGTCCTAATGAATGTCCAGGTTTAAGTG 457136 Query 364037 ATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAA---GG 364093 | |||||||| || | || |||| ||| |||||| || | ||| | Sbjct 457137 AATCTTGGGGTGAAGAATTTGAAAAATTATATACAAAATATGAA---GAAGAAAATTTAG 457193 Query 364094 CTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGA 364153 | || ||| ||| ||||| | |||||||||| || | | || ||||| | Sbjct 457194 GTAAAAAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGCCAAATTGAAA 457253 Query 364154 CAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACC 364213 | || ||| |||||||| || |||||| | || || || || || || | | Sbjct 457254 CTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCTAATCAAAAAAATT 457313 Query 364214 TTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACG 364273 | || |||||| | || || ||||| || ||||||||||| || | || || | Sbjct 457314 TAGGGACAATTAAATGTAGTAATTTATGTTGTGAAATTATTGAATATACATCACCTGATG 457373 Query 364274 AGACTGCCGTATGTAACCTTGCGTCGATCGC 364304 | || || ||||| || || || || || Sbjct 457374 AAGTAGCTGTTTGTAATCTAGCTTCAATTGC 457404 >seq11 Length=733468 Score = 152 bits (168), Expect = 1e-31 Identities = 458/694 (66%), Gaps = 16/694 (2%) Strand=Plus/Minus Query 111192 GAATATCAATATCTTCAGTTGATTTCTAAAGTACTAGAACATGGTGAATATCGAAG-TGA 111250 |||||||||||| | | | || | | | || || ||||| |||| ||| ||| Sbjct 126664 GAATATCAATATTTAAATATTATATATGATATAATAATGCATGGA-AATAAACAAGATGA 126606 Query 111251 CAGAACGGGCACTGGTACCGTAAGTTTATTTGGAGAAACAATGCGTTTTAATCT--GTCA 111308 ||||| || |||| ||||| ||||||| | | ||| |||||| | || | Sbjct 126605 TAGAACAGGTGTTGGTGTATTAAGTAAATTTGGATATATGATGAAATTTAATTTAAGTGA 126546 Query 111309 ACTCATTTTCCACTTCTCACAACAAAGCGAACATATTGGAAG-GGAATTGTCGAAGAACT 111367 | |||| ||| | | |||||||| | || ||| ||| || || | ||||| | Sbjct 126545 AT--ATTTCCCATTATTAACAACAAAAAAATTAT-TTGTAAGAGGTATCATTGAAGAGTT 126489 Query 111368 TCTGTGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAAT 111427 | |||||||| | ||| ||||||| |||| | | || ||||||||||| ||| Sbjct 126488 ATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTAGAAAAAAATGTAAGAAT 126429 Query 111428 TTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGG---TCTTGTCGACAACGA 111484 ||||| | ||||| || | || ||| ||||| | | || | | || | | || Sbjct 126428 ATGGGAAGCTAATGGGACAAGAGAGTTTTTAGAT--AATAGGAAATTATTTC-ATAGAGA 126372 Query 111485 AGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAA 111544 || ||| | || || | || |||||||||||| | ||||||||||| || |||| Sbjct 126371 AGTTAATGACTTAGGGCCGATCTATGGATTTCAATGGAGACACTTTGGTGCTGAATACAC 126312 Query 111545 AACCATGCACGACTCAT-ATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATC 111603 | ||| | | || || || | | || |||||| ||| | ||| | || || Sbjct 126311 AGATATGTATG-CTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAATATTATCAATT 126253 Query 111604 AAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCAT 111663 |||||| || | || || | | | || |||||| || |||||||||| ||| | | Sbjct 126252 TAATTAAAAATGATCCGACATGTAGACGAATTATTTTGTGTGCATGGAATGTAAAAGATT 126193 Query 111664 TGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGA 111723 | || |||||||| | || || |||||| || | || || |||||||| || || | Sbjct 126192 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 126133 Query 111724 TGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATA 111783 | ||||| |||||||| |||||| |||| | |||||||||||||| ||||||| Sbjct 126132 AATTATCATGTATTATGTATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCATTTAATA 126073 Query 111784 TTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATTTTACAAATCTCAAACCGGGTG 111843 |||| || | || |||| | | || || || | ||| | |||| | || Sbjct 126072 TTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAACCAGCTG 126013 Query 111844 AATTCATTCACGTTATCGGAGATGCGCATGTTTA 111877 |||| || || || | ||| |||| |||||||| Sbjct 126012 AATTTATACATGTATTAGGAAATGCTCATGTTTA 125979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303352781738318