Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq8 134 1e-26 seq5 120 3e-22 >seq8 Length=956651 Score = 134 bits (148), Expect = 1e-26 Identities = 178/242 (74%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || |||||||||||||| |||||| | || || | || ||||| ||| | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGA-ACCATC 415343 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | || ||| ||| ||| || |||||||| || || || ||||| Sbjct 415344 TGATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCA 415403 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 || ||| | |||| | || || ||| | ||||||| || ||| | | | ||||||| Sbjct 415404 GCAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAG-AACATTATCTGATTATA 415462 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATAATGAT 24228 | || ||||||||||| ||| | |||||||| |||||||| |||||||| |||| || Sbjct 415463 ATATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGGTTGCTAATCAT 415522 Query 24229 TC 24230 || Sbjct 415523 TC 415524 Score = 111 bits (122), Expect = 1e-19 Identities = 185/264 (70%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 133013 TATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACACTCGTCAGGACAC 133072 |||||| ||||||||||| || | | || | ||||| ||||| || | ||||||| Sbjct 457167 TATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAAACCTGGACATTCATTAGGACAC 457108 Query 133073 ATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAAGGTGTCCACATG 133132 || || | ||| | || | | | ||||| ||||| || || |||| ||| || Sbjct 457107 ATTAAAGTCCAGTGTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATA 457048 Query 133133 GCAAAAAATAAATCGCGAGC-CTTCATATCTTCCGCGCCCATATTTCGTTTCAAGTCCaa 133191 ||| |||||||||| ||||| ||| || ||||| || |||| | | || || || Sbjct 457047 GCATAAAATAAATCACGAGCTCTTAAT-TCTTCTTTACCGTGATTTTTTCTTAAATCTAA 456989 Query 133192 aaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGCGCCTTTCCTTTT 133251 ||| |||||| || | ||||| ||||| |||||||| || |||| ||||| ||||| Sbjct 456988 AAATTCAAAAATATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTT 456929 Query 133252 ---ACCTCCCTGATCCACATGTCT 133272 || || ||||| |||| ||| Sbjct 456928 TCCGCCACCTTGATCTACATATCT 456905 >seq5 Length=1684710 Score = 120 bits (132), Expect = 3e-22 Identities = 158/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 ||||||||| | ||||||||||||||||| |||||| | ||||| | || || || || Sbjct 156533 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGA-ACC 156591 Query 24048 AAC-GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | | || || || || | || ||| ||| || || |||||||| || || || || Sbjct 156592 ATCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGA 156651 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATT 24165 |||||| ||| | |||| | || || ||| | ||||||| ||| ||| | | | || | Sbjct 156652 TCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAG-AACTTTATCTGACT 156710 Query 24166 ATAACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||||||||||||||| || | ||||| || Sbjct 156711 ATAACATTCAAAAAGAATCAACCTTACATTTGGT 156744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429935743247595