Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8 405 6e-108 seq4 168 8e-37 >seq8 Length=956651 Score = 405 bits (448), Expect = 6e-108 Identities = 1006/1507 (67%), Gaps = 35/1507 (2%) Strand=Plus/Minus Query 62179 ATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGT 62238 ||| ||||| || || |||||| ||| || || | | | ||||| ||||| || Sbjct 457981 ATGGGGATTGACAACAAAAAATTCACCACTTAAAACACGTCTATAATAAATGTTACTTGT 457922 Query 62239 ATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 62298 ||| ||||| | || ||||||||||| |||||||| | |||||| || || |||||||| Sbjct 457921 ATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGG 457862 Query 62299 TGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCA 62358 ||| | | | | |||||| | || | | || ||||| | ||||| ||||| Sbjct 457861 TGCTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCA 457802 Query 62359 ATTCCAAAGATCCGACGGTACAA---CNNNNNNNNNNNNNNNTTGTAGAATACCGTTACT 62415 || |||| | ||| | ||||| || || || || Sbjct 457801 ATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAAATTGTAATATTCCTTTGCT 457742 Query 62416 GGC-GTACGATCCTACATATGTATCGTATGGTCC--TTCCTTCTCAGCTAGTTCACAACT 62472 || | || | ||| ||||| || ||||| || || ||| | |||| |||| || Sbjct 457741 TGCTGGACTA-CCTTGATATGATTCATATGGGCCATTTACTTGT--GCTAATTCA--AC- 457688 Query 62473 CGCC---TCTAATGCACCGTAATAAATGGTTTCGAAGAT-CTTCTTATTTAGATCTTGCG 62528 || | ||||| ||| | ||||| || ||||| || || ||||| ||||| |||| | Sbjct 457687 CGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT-ATTTAATTCTTTAG 457629 Query 62529 CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 62588 ||||| ||| ||||||| |||| || ||||| | |||||||||||||| || | Sbjct 457628 CTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTGCTAATCCTTGTACTC 457569 Query 62589 CAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAAT 62648 | || || |||||||||||||| ||||| || ||||||||||| ||| || ||||||| Sbjct 457568 CTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATAAT 457509 Query 62649 TAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGA 62708 | | || |||||||||| | |||||| ||| | ||| | ||| | | ||| Sbjct 457508 TTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTATAATTTTT 457449 Query 62709 GAAAATCAAA-----TCGCCCATCTAT-TACAAACATGTTCAATGCAACAGATGCCAGAT 62762 ||||| ||| | ||||| ||||| | ||||||| || || |||| Sbjct 457448 TAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCTAGAT 457389 Query 62763 TACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTAC 62822 ||||||| ||||| |||| || | ||||| || || ||| || | |||||||| Sbjct 457388 TACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACAACATAAATTACTAC 457329 Query 62823 ACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAA 62882 | || || || |||||||||| ||||||| || ||||| ||||| ||||| | | Sbjct 457328 ATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTATATAACA 457269 Query 62883 TGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCT 62942 | |||| |||||||||||| || || || || || ||| | || | || Sbjct 457268 TATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCATAAATCTTGTGCAA 457209 Query 62943 TTATTATAGATTTGTATCT--CTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTC 63000 | | | ||| || || |||||| ||| ||| |||||| ||| ||| || || Sbjct 457208 GAACTGT--TTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTCAAATTC 457151 Query 63001 GTCTCCCCAAACATTGTC-CAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTC 63059 || |||| || ||| | | || |||||||||| |||||||| || | ||| | | Sbjct 457150 TTCACCCC-AAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCAGTGTT 457092 Query 63060 CGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTC 63119 | || || || | |||||||| | |||||| | ||| | ||| ||||| ||| | Sbjct 457091 TATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAAATCAC 457032 Query 63120 TGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAG 63179 | ||| ||| || || || ||| ||| | | ||| | || | | |||||||| Sbjct 457031 GAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAATATCAG 456972 Query 63180 AATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTA 63239 | ||||| || || | |||| || | | || | ||| || || ||||||| Sbjct 456971 AGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTGATCTA 456912 Query 63240 TGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCAT 63299 ||||| || || | |||| ||||||| |||||||||| | ||||| ||| |||||| Sbjct 456911 CATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATATACCAT 456852 Query 63300 TGGTCCCTGAGATAT-AGCTTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCC 63358 | || ||| |||| || | | | ||||||| | | | |||||| || Sbjct 456851 TAGTTCCTCTAATATAAGAATTTTGT-CCTCGAATATCTTGTACAGCAACACCTATACCT 456793 Query 63359 CCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTA 63418 ||||| ||||| ||| ||||| ||| | ||||| || ||| | || || ||||| | Sbjct 456792 CCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTATTGAA 456733 Query 63419 TCATCCATCA-TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATT 63477 ||| ||| || ||| || |||||| |||||||||| | | ||||||| ||| Sbjct 456732 TCAGATTTCATTGATAA-TAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGAATT 456674 Query 63478 AAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT 63537 |||||| ||||||| ||| |||||||| |||||| ||| | || || ||| || || | Sbjct 456673 AAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGTTTCTAA 456614 Query 63538 AGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAG 63596 |||| || ||||| || | ||| ||||||| | || | |||||| | || |||| Sbjct 456613 AGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCTCATTAATAAATGTTGAG 456555 Query 63597 GTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAAC 63656 | | ||||| || || || || || || ||||| || | || || |||||||| | Sbjct 456554 GACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAAATC 456495 Query 63657 CAAAATA 63663 ||||||| Sbjct 456494 CAAAATA 456488 >seq4 Length=1653377 Score = 168 bits (186), Expect = 8e-37 Identities = 374/556 (67%), Gaps = 4/556 (1%) Strand=Plus/Minus Query 32667 AAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGC 32726 |||||| ||||| || || || |||||||||||||| || ||| || | || | Sbjct 1529454 AAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCATGT 1529395 Query 32727 ATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCT 32786 | | | ||||||| ||||||||| | ||| |||| ||| || |||||| Sbjct 1529394 AATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTCCT 1529335 Query 32787 TCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTATCCACTTT 32846 || || ||| || | || ||| || || || | |||| ||||| || Sbjct 1529334 TCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTGTATCATTGATCCATTTA 1529275 Query 32847 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 32906 ||||| || || ||||||| || || | || ||||||| ||| | || Sbjct 1529274 GCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATAAATTT 1529215 Query 32907 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 32966 | || || ||| |||| ||| ||||||| || | |||||| |||| ||||| Sbjct 1529214 AACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTCAGAATGT 1529155 Query 32967 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCT 33026 || ||||||| || |||||||| || || | | || || | || ||||| ||| Sbjct 1529154 ATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTGTACCTCT 1529095 Query 33027 GTACAAAATCGTTCT-GCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33085 | ||||| | || || |||||||| |||||||| ||||| ||||||||||| || Sbjct 1529094 CTTAAAAATT-TACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAAAAATGC 1529036 Query 33086 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAA-TCATTGATAT 33144 || |||||||||||||||| |||||| | | ||| ||| ||| || || || | || Sbjct 1529035 TAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGTCTTTCAAAT 1528977 Query 33145 CTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATAT 33204 | | |||| ||| | ||||| | ||||||||||| || || || |||||||| | || Sbjct 1528976 CACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTTTATAAAAAT 1528917 Query 33205 TCCAGATGTCATGATA 33220 |||| | ||| |||| Sbjct 1528916 TCCATACCTCAGGATA 1528901 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631611900400