Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq4 210 2e-49 >seq4 Length=1653377 Score = 210 bits (232), Expect = 2e-49 Identities = 578/869 (67%), Gaps = 29/869 (3%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||||| ||||||| || || ||||| | ||||||||||||||||| ||||||| Sbjct 1529764 CATAACACCTGATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTG 1529705 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGAT 92907 || ||||| | | || | | | | |||||| || | | || ||||| | | | Sbjct 1529704 TAACGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTAGAACAAC 1529646 Query 92908 CAACTCGTAC-AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCAC-AA 92965 | | | | | ||||||| |||||| |||||||| || || |||||||| || || || Sbjct 1529645 CTAAACATTCTAATAATCGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCTTGAA 1529587 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAA--ATCTTTCTCGATTACAA 93023 |||||||| | | | ||||| || || | || |||||||| | | ||| Sbjct 1529586 TTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCT--ACTTCAA 1529529 Query 93024 CGGCTTCTTTCA--AGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAATT 93081 | |||||||| | | |||| | | || || | |||| ||| | | | | | | Sbjct 1529528 CTGCTTCTTTAACTATATTTTGAACAACCT-CT-TCTGGTAATTTATTTTCTAACAAGCT 1529471 Query 93082 GTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCT 93141 || ||||| || ||| ||||| ||||| ||||| || | || || ||||| || Sbjct 1529470 ATAAATTAAACAATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACT 1529411 Query 93142 GAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACC 93201 ||||||||||| |||| | |||| || | ||||||||||| | |||||| || Sbjct 1529410 AAATGTTAAACCATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCC 1529351 Query 93202 AGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAA---AATTTGC 93258 | ||| ||||| ||||| || |||| || ||||| | ||| |||| |||||| Sbjct 1529350 ACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAGAATTTG- 1529292 Query 93259 GGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGT 93318 || |||||||||| ||||| ||||| || || || |||| | Sbjct 1529291 -----TATCATTGATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATT 1529237 Query 93319 TTCGATAGCGTTAAAT--AGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATT 93376 ||| ||||| | |||| | ||| || ||| | | ||| || || |||| ||| Sbjct 1529236 TTCAATAGCATGAAATAAATTTAACCT--CTCTTTCTCATCCTTAATATAATTATCAATT 1529179 Query 93377 AACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACAT 93436 || | | ||| |||||||||| | ||| || | || ||||| || || || | Sbjct 1529178 AATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTT 1529119 Query 93437 CTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTA-CGAGATTTTCATTGACTAT 93495 | ||||| | || || || ||| ||||| | ||| | | |||||| ||||| Sbjct 1529118 TTGGCTTCAATTATTTGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTAT 1529060 Query 93496 ACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTT 93555 ||||| ||||||||||| || || | ||| |||||||||||||| |||| | || Sbjct 1529059 TCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT 1529000 Query 93556 AAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGA 93615 | || || | || | ||| |||| | ||| | ||||| |||||||||| || Sbjct 1528999 TAATTTTTCAAAGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGA 1528940 Query 93616 TGCTTCTGCTTTTTTGTACATATCCCATA 93644 ||||| |||||||| || | || ||||| Sbjct 1528939 GGCTTCAGCTTTTTTATAAAAATTCCATA 1528911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860458922760