Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq8 156 4e-33 seq5 156 4e-33 >seq8 Length=956651 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || ||||| ||||| || ||||| |||||||||| || ||| | | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | || || | ||| |||||||||||| || || ||||| ||||| ||||| Sbjct 415345 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 415404 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | | || ||||| || ||||| ||||| ||| | || | || ||||| || Sbjct 415405 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAAT 415464 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTT 22447 || ||||||||||| || ||||||||||||| |||| | ||||||| Sbjct 415465 ATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGGTT 415513 Score = 102 bits (112), Expect = 7e-17 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || ||||| |||||||||| || ||| | | ||||| | || || | ||| |||| Sbjct 414686 GGAAAAACAATCACTCTTGATGTCGAACCATCTGATACTATTGAAAATGTTAAAGCAAAA 414745 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 |||||||| || || ||||||||||| ||||| ||| | | || ||||| || ||||| Sbjct 414746 ATTCAAGATAAAGAAGGTATTCCACCTGATCAGCAAAGATTAATTTTTGCTGGAAAACAA 414805 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||||| ||| | | || | || || || ||||| |||||||| Sbjct 414806 TTAGAAGATGGCAGAACATTATCTGACTATAACATACAAAAAGA 414849 >seq5 Length=1684710 Score = 156 bits (172), Expect = 4e-33 Identities = 170/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 22202 TTTATACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTC 22261 ||| ||||||| || |||||||| ||||| ||||| |||||||| ||||| | |||| Sbjct 156519 TTTTTACATTTACGAAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTC 156578 Query 22262 TTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGG 22321 |||| || ||| | | ||||| | || || | ||| |||||| ||||| || || | Sbjct 156579 TTGATGTTGAACCATCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAG 156638 Query 22322 GTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCA 22381 | ||||| || ||||||||| | | || ||||| || ||||| ||||| ||| | | | Sbjct 156639 GAATTCCCCCTGATCAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAA 156698 Query 22382 CCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGT 22427 | | || || || ||||||||||||||||| ||| ||||||| || Sbjct 156699 CTTTATCTGACTATAACATTCAAAAAGAATCAACCTTACATTTGGT 156744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727749343685