Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq5 95.1 9e-15 seq8 93.3 3e-14 >seq5 Length=1684710 Score = 95.1 bits (104), Expect = 9e-15 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 ||||||||||| ||| | ||||||||||| || ||||| ||||| | || ||| | Sbjct 156533 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCA 156592 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 |||| || | | || |||| |||||| |||||||| || | || | Sbjct 156593 TCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 156652 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 ||||| ||| | || |||||||| |||||| |||||||| | |||| | | || || Sbjct 156653 CAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTAT 156712 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTA 22052 || ||||| || ||||| || | ||| ||||| || |||| Sbjct 156713 AACATTCAAAAAGAATCAACCTTACATTTGGTAATATATTTA 156754 >seq8 Length=956651 Score = 93.3 bits (102), Expect = 3e-14 Identities = 166/241 (69%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | ||||||||||| || ||||| || || | || ||| | | Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAAC 21950 || || | | || |||| ||||||| |||||||| ||| | ||||| | Sbjct 415345 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTG---AT 415401 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || ||| | || |||||||| |||||| |||||||| || ||| | | ||||| Sbjct 415402 CAGCAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTAT 415461 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGATATTAATAA 22070 ||||| || || ||||| || | ||| | || ||| | ||| ||||||| | |||| | Sbjct 415462 AATATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGGTTGCTAATCA 415521 Query 22071 T 22071 | Sbjct 415522 T 415522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358124586132346