Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8 116 9e-21 seq5 109 1e-18 >seq8 Length=956651 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| |||||||| || | | || | ||| ||||||||||||||||| || || Sbjct 415476 TTCTTTTTGTATATTATAATCAGATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAA 415417 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | || ||| | |||||| ||||||||||| || ||||| ||||| || || Sbjct 415416 AATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGAATTTTTGCTTTAACATT 415357 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| |||| ||| | ||| || || || ||||| || || || || | || || || Sbjct 415356 TTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTAC 415297 Query 288462 GAATATCTGCAT 288473 ||| || ||||| Sbjct 415296 GAAAATTTGCAT 415285 Score = 93.3 bits (102), Expect = 1e-13 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 |||||||| || |||||||| | | || | || ||||||||||||||||| || || Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAA 414790 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || | | || ||| | ||| || ||||||||||| || ||||| ||||| || ||| Sbjct 414789 ATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTT 414730 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || |||| ||| | ||| || || || ||||| || || || Sbjct 414729 TCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCC 414686 >seq5 Length=1684710 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||||||||| || |||||||| | | || | || ||||||||||||||||| || || Sbjct 156727 TTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCAGCAAA 156668 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| | || |||||||||||||| |||||||| ||||| || || Sbjct 156667 AATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTAACATT 156608 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 ||| || | ||| | ||| || || || || || || || ||||| | || || || Sbjct 156607 TTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTTTTTAC 156548 Query 288462 GAATATCTGCATT 288474 || || |||||| Sbjct 156547 AAAGATTTGCATT 156535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653659398222