Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq8 125 5e-24 seq5 104 2e-17 >seq8 Length=956651 Score = 125 bits (138), Expect = 5e-24 Identities = 167/230 (73%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 || |||| ||||||||||||||||| | || || ||||||||||| || ||||| | Sbjct 415511 CCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCA--G 415454 Query 15010 AGAAT--TCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| ||| | |||||||||||||| ||||| | || || | || || || || Sbjct 415453 ATAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTG 415394 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||| || || |||||| ||| ||| |||| |||||||| ||| | Sbjct 415393 GGATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGA 415334 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | || || ||||| ||||| | |||||||| |||||||||||| Sbjct 415333 CATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCATA 415284 >seq5 Length=1684710 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || ||||| | ||| || |||||||| ||||| || || | | |||| | |||||| Sbjct 156744 ACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCT 156685 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 |||||||| ||||| | || || | ||||| || ||||||||||| || || Sbjct 156684 AATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGG 156625 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||| ||| |||| || ||||| ||| || || | ||||| ||||| Sbjct 156624 ATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTT 156565 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | ||||||||||| |||||||| || Sbjct 156564 CCGGTTAATGTTTTTACAAAGATTTGCATTTT 156533 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357391786569965