Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq8 136 4e-27 seq5 122 8e-23 >seq8 Length=956651 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 || || |||| ||| | |||||||| ||||| ||||||||||| | ||| | | Sbjct 415499 CTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGATAATGTTCTTCCA 415440 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || || ||||||||||| || | || |||| |||||| || || || || ||||||||| Sbjct 415439 TCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTA 415380 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 |||||||||||| ||| | ||| | || || || | ||||| || ||||| | Sbjct 415379 TCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGACATCAAGAGTGATT 415320 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || |||| |||||||| ||||||||||| Sbjct 415319 GTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| || ||||||||||| || | || |||| |||||| || || ||||| |||||||| Sbjct 414814 ATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGAATACCTTCTTT 414755 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||||||||||| ||| | ||| | || || || | ||||| || ||||| | Sbjct 414754 ATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGACATCAAGAGTGAT 414695 Query 45305 CGTTTTGCC 45313 ||||| || Sbjct 414694 TGTTTTTCC 414686 >seq5 Length=1684710 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 45144 GTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCT 45203 |||||||| ||||| || ||||| || | ||| | ||| || ||||||||||| Sbjct 156732 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 156673 Query 45204 GCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTG 45263 || | || |||| ||| || || || ||||| |||||||||||||| |||||| ||| Sbjct 156672 GCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 156613 Query 45264 ATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTT 45323 | ||| | || || || | || || || ||||||| ||||| ||||||| ||| Sbjct 156612 ACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTT 156553 Query 45324 TTTACAAAAATTTGCAT 45340 |||||||| |||||||| Sbjct 156552 TTTACAAAGATTTGCAT 156536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002923148040