Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5 113 3e-20 seq8 107 1e-18 >seq5 Length=1684710 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 39510 TACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTC 39569 ||||||||| || || ||||||||| || ||||| || | ||| | |||| || Sbjct 156745 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTC 156686 Query 39570 CAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCA 39629 |||||||| || |||||||||| | || ||||| | ||| | |||||||| || Sbjct 156685 TAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 156626 Query 39630 TATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 |||||| ||||| | | | ||| |||| ||| || || | |||||||||||| Sbjct 156625 GATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTT 156566 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| |||||||| ||||| ||||| Sbjct 156565 TCCGGTTAATGTTTTTACAAAGATTTGCAT 156536 >seq8 Length=956651 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCC 39570 || ||||| || || ||||||||||||||||||||| | || | | |||| || Sbjct 415493 ACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGATAATGTTCTTCCATCTTCT 415434 Query 39571 AATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCAT 39630 |||||||| || |||||||||| | |||||||| | || | |||||||| || Sbjct 415433 AATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACCTTCTTTATCTTGA 415374 Query 39631 ATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTA 39690 |||||| ||||| | | | || || | ||| || || | ||| |||||||| Sbjct 415373 ATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTT 415314 Query 39691 CCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || ||||| ||||||||||| || ||||| Sbjct 415313 CCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347369392555217