Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq8 167 3e-36 >seq8 Length=956651 Score = 167 bits (184), Expect = 3e-36 Identities = 712/1113 (64%), Gaps = 18/1113 (2%) Strand=Plus/Plus Query 111888 AAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTA 111947 || ||| ||||||||| || |||||| |||| |||| | |||||||| | | || Sbjct 456830 AATTCTTATATTAGAGGAACTAATGGTATATCAAATGGGTTAGTTCCAATGTTAAGAGTT 456889 Query 111948 TTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTC---GCAAGGGATCTATCGCA 112004 ||||| | ||||| | |||||| | |||| ||| | | || || ||| | || Sbjct 456890 TTTAATGATACAGCAAGATATGTAGATCAAGGTGGCGGAAAAAGAAAAGGTTCTTTTGCT 456949 Query 112005 GTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAA 112064 || ||| |||||||||||||| | ||||| | || || | || || | || || Sbjct 456950 GTATATATTGAGCCATGGCACTCTGATATTTTTGAATTTTTAGATTTAAGAAAAAATCAC 457009 Query 112065 GGTGATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTC 112124 ||| | || || | || ||| | || | ||| | ||| | || ||| | || Sbjct 457010 GGTAAAGAAGAATTAAGAGCTCGTGATTTATTTTATGCTATATGGGTACCTGATTTATTT 457069 Query 112125 ATGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGT 112184 |||||||| ||| | || | | | ||| || | | ||||| | | || ||| Sbjct 457070 ATGAAGAGGGTTAAAGAAAATAAACACTGGACTTTAATGTGTCCTAATGAATGTCCAGGT 457129 Query 112185 CTCTCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGT 112244 | || | |||||| || |||||| | || ||||| || || ||||||| | Sbjct 457130 TTAAGTGAATCTTGGGGTGAAGAATTTGAAAAATTATATACAAAATATGAAGAAGAAAAT 457189 Query 112245 CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAAC 112303 | | || || | || ||| | ||| ||||| | ||| | |||| Sbjct 457190 TTAGGTAAAAAAACAGTTCTTGCACAAGATTTATGGTTTGCTATATTACAAAGC-CAAAT 457248 Query 112304 CGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 112363 || |||||| |||||||||| | || ||||| || ||||| || ||||||||| Sbjct 457249 TGAAACTGGTGTACCATATATGTTATATAAAGATGCATGTAATTCTAAATCTAATCAAAA 457308 Query 112364 GAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAA 112423 ||||| || || || || || | ||| ||||| | |||| |||| Sbjct 457309 AAATTTAGGGACAATTAAATGTAGTAATTTATGTTGTGAAATTATTGAATATACATCACC 457368 Query 112424 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA 112483 ||||| ||||| ||||| || || ||||| || | || | ||| ||| ||| Sbjct 457369 TGATGAAGTAGCTGTTTGTAATCTAGCTTCAATTGCATTATGTAAATTTGTTGATAGAGA 457428 Query 112484 GACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCT 112543 | ||| |||| ||| | ||||| | |||| |||| |||| | | || | ||| | Sbjct 457429 AAAAAAAGAATTTAATTTTAAAAAATTATACGATATTACTAAAATTATTACTAGAAATTT 457488 Query 112544 AAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAG 112603 | | | | ||||||| ||||||| |||||| || | ||| ||||| |||| || Sbjct 457489 AGATAAAATTATTGAAAGAAATTATTACCCAATTAAAGAAGCTGAAAAATCAAATAAAAG 457548 Query 112604 ACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCA 112663 ||| | || ||||| | || || ||||| | || ||| ||| || |||| | | Sbjct 457549 ACATAGACCTATTGGAATAGGAGTACAAGGATTAGCAGATACATTTATGCTTTTAAGATA 457608 Query 112664 CGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCA 112723 ||| ||| || || ||||| || ||| | ||| | |||||||| || |||||| | Sbjct 457609 TCCATATGAATCTGAGGAAGCTAAAGAATTAAATAGAAGAATATTTGAAACTATGTATTA 457668 Query 112724 CGCCGCTCTTGA---GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTT 112780 || ||| | || | || ||| || || ||| | || |||| ||||||||| | | Sbjct 457669 TGCTGCTTTAGAAATGTCG-GTT--GAATTAGCACAAGTAAATGGCCCATATGAATCATA 457725 Query 112781 TGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCA- 112839 | | ||| |||||| |||| | | ||||||||||||| |||| | | | | Sbjct 457726 TCAAGGTAGTCCAGCAAGCAAAGGAATATTACAATTTGATATGT-GGAATGCAAAAGTAG 457784 Query 112840 AGCTTCACTA---CGACTGGGACGCTCTCAAGGAACGCATCAAGGA-GAAGGGTCTTCGT 112895 | | | || || ||||| | | || || | ||| | | | || | | Sbjct 457785 ATAATAAATATTGGGATTGGGA-TTTATTAAAAAAAAAAATAAGTATGCATGGATTAAGA 457843 Query 112896 AACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAAT 112955 || |||| | | ||||| ||||||||||| || || ||||||| || || |||||| Sbjct 457844 AATTCTCTTCTTTTAGCACCTATGCCAACAGCTTCAACTTCACAAATTTTAGGAAATAAT 457903 Query 112956 GAATGCTTTGAACCCTACACGACGAACATCTAT 112988 |||| ||||||||| || || | ||||| ||| Sbjct 457904 GAATCCTTTGAACCATATACAAGTAACATTTAT 457936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742019795280