Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq8 102 1e-16 >seq8 Length=956651 Score = 102 bits (112), Expect = 1e-16 Identities = 454/713 (64%), Gaps = 7/713 (1%) Strand=Plus/Minus Query 110329 GTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGA 110388 || ||||| | |||||| ||| || || || ||||| || || || || ||| Sbjct 457362 GTATATTCAATAATTTCACAACATAAATTACTACATTTAATTGTCCCTAAATTTTTTTGA 457303 Query 110389 TTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGT 110448 || ||||| || || |||||||| ||||| | ||| ||||| ||||||||| | || Sbjct 457302 TTAGATTTAGAATTACATGCATCTTTATATAACATATATGGTACACCAGTTTCAATTTG- 457244 Query 110449 GACTTGAGA-ATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTC 110507 | ||| | || || ||||| ||| || | || ||| ||| | | | ||| Sbjct 457243 GCTTTGTAATATAGCAAACCATAAATCTTGTGCAAGAACTGTTTTTTTACCTAAATTTTC 457184 Query 110508 CTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTT 110567 || || || || || || || | |||||||| | || | ||| | ||| | Sbjct 457183 TTCTTCATATTTTGTATATAATTTTTCAAATTCTTCACCCCAAGATTCACTTAAACC-TG 457125 Query 110568 CGCCTTG-TCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACA 110626 | || | ||||| | | | ||| | | | || | |||||||||||| || | Sbjct 457124 GACATTCATTAGGACACATTAAAGTCCAGTGTTTATTTTCTTTAACCCTCTTCATAAATA 457065 Query 110627 GGTCAGGAATCCACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGT 110686 ||||| | ||| || || | || | ||||| | ||||| | ||| || | Sbjct 457064 AATCAGGTACCCATATAGCATAAAATAAATCACGAGCTCTTAATTCTTCTTTACCGTGAT 457005 Query 110687 TGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGA 110746 | | || || ||||| || | ||||| ||||||||||| || | ||| ||||| | Sbjct 457004 TTTTTCTTAAATCTAAAAATTCAAAAATATCAGAGTGCCATGGCTCAATATATACAGCAA 456945 Query 110747 TGGATCCCTTAC---GACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCC 110803 || || || | | || | || | ||||| | |||||| |||| || || | Sbjct 456944 AAGAACCTTTTCTTTTTCCGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTC 456885 Query 110804 TGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGG 110863 | | ||| |||| | |||| ||| |||||| || || ||||| || || | Sbjct 456884 TTAACATTGGAACTAACCCATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGTC 456825 Query 110864 CACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACT 110923 | ||||| || || | | | ||| ||||| || || ||||| || |||||| | Sbjct 456824 CTCGAATATCTTGTACAGCAACACCTATACCTCCTGCTGTTTTACTGATCAATGCACATT 456765 Query 110924 CTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAG 110983 | | ||| || | ||||| || || ||||| | || | | | || ||| || | Sbjct 456764 GCTTTAATGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAACATG 456705 Query 110984 AAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGA 111036 ||||||| || || | || ||||||| ||| || | |||||| || |||||| Sbjct 456704 AAGACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGA 456652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975639252200