Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq8 131 4e-25 seq5 129 1e-24 >seq8 Length=956651 Score = 131 bits (144), Expect = 4e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| ||||| | || | || || |||||||| ||||| ||||| | | || Sbjct 415506 TCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGATAATGT 415447 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 ||| |||||||| | || || || || || || | || ||| || || || || || || Sbjct 415446 TCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGGGATACC 415387 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 |||||| |||||||||||| || || || ||||| || || || ||| || ||||| Sbjct 415386 TTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGACATCAAG 415327 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || |||||||| || ||||||||||| | |||||| Sbjct 415326 AGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 93.3 bits (102), Expect = 9e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 |||||||| || || || || | | ||||| |||||||| | || || || || || Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAA 414790 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | || ||| || || || ||||| |||||||| |||||||||||| || || || Sbjct 414789 ATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTT 414730 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTG 195115 ||||| || || || ||| || ||||| || | || ||||||| Sbjct 414729 TCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTG 414684 >seq5 Length=1684710 Score = 129 bits (142), Expect = 1e-24 Identities = 148/199 (74%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 194944 GTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCT 195003 || || ||||||||||| || || || | | |||||| |||||||| | || || || Sbjct 156732 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 156673 Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || || || | || |||||| || || ||||| |||||||| ||||| |||||| || Sbjct 156672 GCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 156613 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 || || ||||| || || || ||| || ||||| |||| || ||||| || || ||| Sbjct 156612 ACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTT 156553 Query 195124 TTTACGAACACTTGCATTT 195142 ||||| || | |||||||| Sbjct 156552 TTTACAAAGATTTGCATTT 156534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480903453583