Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_015780.1 Length=205791 Score E Sequences producing significant alignments: (Bits) Value seq11 138 1e-27 seq13 116 5e-21 seq8 89.7 7e-13 >seq11 Length=733468 Score = 138 bits (152), Expect = 1e-27 Identities = 427/651 (66%), Gaps = 16/651 (2%) Strand=Plus/Minus Query 104796 AATTTGATTTAAGTGAAGGAATTGTACCATTGCTTACAACaaaaaaaaTAGTT-TACGCC 104854 ||||| ||||||||||| ||| | ||||| | |||||||||||| || || || | Sbjct 126561 AATTTAATTTAAGTGAAT--ATT-TCCCATTATTAACAACAAAAAAATTATTTGTAAGAG 126505 Query 104855 AATATTCTTAAAGAATTATTATGGGTGATGAAAGGTTTAACAAATTCTAACTTGTTAAAT 104914 ||| || |||| ||||||||| | || | || ||||||| || ||| Sbjct 126504 G-TATCATTGAAGAGTTATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 126446 Query 104915 GAAATTGGTGTTAAAGTATGGAATGATAATGGTTCACGTAAGTTTTTAGATTCTTGTGGA 104974 |||| ||| | | ||||| | | |||||| || | ||||||||||| | | | Sbjct 126445 GAAAAAAATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 126386 Query 104975 TTTCACTTTCGAAAAGAAGGTGAT---TTAGGACCAATTTATGGATTTCAATGGAGACAT 105031 || |||| | ||||| | || ||||| || || |||||||||||||||||||| Sbjct 126385 TTA---TTTCATAGAGAAGTTAATGACTTAGGGCCGATCTATGGATTTCAATGGAGACAC 126329 Query 105032 GCTGGAGCTCAATATATCGAC-TGTGATACCGACTATACCGGCCAAGGTATAGACCAATT 105090 ||| ||| |||| | || ||| || | || |||| | ||||| | || || || Sbjct 126328 TTTGGTGCTGAATACACAGATATGT-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTT 126270 Query 105091 AAGTCAAGTTATAGAAACTATAAAAAATAACCCCGGGTGTCGAAGAATAATTATAGATAG 105150 || | |||| | || |||||| | || ||| || |||| ||| | | Sbjct 126269 AAAAAATATTATCAATTTAATTAAAAATGATCCGACATGTAGACGAATTATTTTGTGTGC 126210 Query 105151 TTGGAATGTGTCACAATTATCAGATATGGCTCTTCCACCGTGTCATTGTTTGGTACAATT 105210 |||||||| | | ||| | ||||| | || || |||||| ||| ||||| Sbjct 126209 ATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATT 126150 Query 105211 TTACATTAGAAATAAAATTTATTTAGATTGTCAATTGTATCAAAGATCTGCAGATTTAGG 105270 ||| || || || | ||| ||| |||||||| ||||| |||||||| Sbjct 126149 TTATGTTTTTGATGGAA---AATTATCATGTATTATGTATCAACGATCTTGTGATTTAGG 126093 Query 105271 ATTAGGTGTACCATATAATATTGGTTTCTATTCATTTTTGGTGTGTGTTCTCTCAAAATG 105330 | ||||| |||| |||||||| || |||||| | || | | | | || || Sbjct 126092 TCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGT 126033 Query 105331 GTGTAATCTAACCCCCGGAAAATTTATTCATACTTTTGGAGATGTTCATGTATATTCTAA 105390 |||||| || || | ||||||| ||| || ||| ||| |||||| ||| ||| Sbjct 126032 ATGTAATTTACAACCAGCTGAATTTATACATGTATTAGGAAATGCTCATGTTTATAATAA 125973 Query 105391 CCATGTTGACCAATTAAAAATTCAATTAAACAGAAAACCTTACACCTTCCC 105441 |||||||| ||||||||||| ||||| |||| ||| || | ||||| Sbjct 125972 TCATGTTGAAAGTTTAAAAATTCAGTTAAATAGAACACCCTATCCTTTCCC 125922 >seq13 Length=615600 Score = 116 bits (128), Expect = 5e-21 Identities = 160/221 (72%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 126920 TACTGGAAGAAGGATAAAGAGTAAAATTTTTATAGGTCCAACATACTATCATCGTCTTAA 126979 || ||| |||| | |||| ||||| |||||||| ||||||| ||||| | | || Sbjct 433897 TAATGGTAGAATGCTAAAATCGAAAATATTTATAGGACCAACATTTTATCAAAGATTAAA 433956 Query 126980 ACATATGGTTAAAGATAAAATGCATGCTAGAAGTCATGGTCAAGTAAC-AACATTACATC 127038 ||||||||| |||||||||| ||||| |||||| || | |||| | |||||| Sbjct 433957 ACATATGGTAGAAGATAAAATACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-A 434015 Query 127039 GTCAACCAAACTGTGGTCGTTCCCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAG 127098 | ||||||| || | || || |||||| |||||||||||||||||||||| || Sbjct 434016 GACAACCAACAGAAGGAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAG 434075 Query 127099 ATTGTATTTTGGTTCATGGAGCCACACAATTTTTAAATGAA 127139 ||||||| | ||||||| | | || | ||||| ||| Sbjct 434076 ATTGTATGATATCTCATGGATCTGCTAAAATGTTAAAAGAA 434116 >seq8 Length=956651 Score = 89.7 bits (98), Expect = 7e-13 Identities = 119/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 126945 ATTTTTATAGGTCCAACATACTATCATCGTCTTAAACATATGGTTAAAGATAAAATGCAT 127004 |||||||| ||||| | ||| ||||| | |||||||||||| |||||||||| ||| Sbjct 213659 ATTTTTATGGGTCCGATATATTATCAGAAATTAAAACATATGGTTCAAGATAAAATTCAT 213600 Query 127005 GCTAGAAGTC-ATGGTCAAGTAACAACATTACATCGTCAACCAAACTG-TGGTCGTTCCC 127062 ||||| || | || | || | | |||| || ||||| ||||| ||||| || Sbjct 213599 GCTAGGTCTCGAGGGCCTAGGCA-ATTATTAACACGCCAACC-AACTGAAGGTCGATCAA 213542 Query 127063 AAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTG 127102 ||| || ||||| ||| |||| |||||||||| |||||| Sbjct 213541 AAGAAGGAGGATTGAGACTTGGTGAAATGGAAAGAGATTG 213502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658402796728040