Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq8 522 3e-143 seq4 324 2e-83 >seq8 Length=956651 Score = 522 bits (578), Expect = 3e-143 Identities = 1145/1704 (67%), Gaps = 48/1704 (3%) Strand=Plus/Minus Query 47123 CTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTGGTATCTC 47182 ||| ||||| || | || | ||||| |||||||| | |||| ||||| || || Sbjct 458173 CTGGTCAATGAAAACCCCACGGTCAGCAGCCATATCAATAATATTTTTTTGTTTGATTTC 458114 Query 47183 CCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGAGAT---TAGTATTTTGAATAGA 47239 ||| ||||||||||| | || ||| | ||| || | | || ||| ||| | | Sbjct 458113 CCAAACTGTTTTATACAATTCTTTCAAGTCACTAGGTATTTCACTAATATATTGGACA-- 458056 Query 47240 TCCTCCgttttctataatt--ttgttttttaat-tcatttgaccaaagttttcgttcagt 47296 | ||| || | |||| ||||| ||| || || | |||||| || ||| Sbjct 458055 -CTTCCATTATGGGCAATTAATTGTTGTTTCATATCTTCATCCCAAAGACCTCTATCAAA 457997 Query 47297 taatgtttttaaAAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTCTACGGCT 47356 | |||||| | ||| ||||| |||| |||||| ||| || || ||| || Sbjct 457996 AAGATCTTTTAATAAATGGGGATTGACAACAAAAAATTCACCACTTAAAAC---ACGTCT 457940 Query 47357 ATAT---ATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAGCAGT 47413 ||| || ||||||||||||||||| | |||||||||||||| |||||||| | ||| Sbjct 457939 ATAATAAATGTTACTTGTATATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGT 457880 Query 47414 TGATGCTGTAGGCATGGATGCAACTAATAAGCTA-TTTCTTACTCCATATTTTTGTATCT 47472 ||| ||||| ||||| | ||| | || ||| | ||||||| ||||| | ||| | Sbjct 457879 TGAAGCTGTTGGCATAGGTGCTAA-AAGAAGAGAATTTCTTAATCCATGCATACTTATTT 457821 Query 47473 NNNNNNNNNNNNGTTTCCAATCCCAA-AGATCTGATGGAACAA--CATTCCAAAAATCAT 47529 | |||||||||| | | | || | ||||||| | |||| Sbjct 457820 TTTTTTTTAATAAATCCCAATCCCAATATTTATTATCTACTTTTGCATTCCACATATCAA 457761 Query 47530 ATTGAAGAATTCCTTTACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTT 47589 |||| | |||||||| ||| ||| ||| | ||||| || ||| || || | || || Sbjct 457760 ATTGTAATATTCCTTTGCTTGCTGGACTACCTTGATATGATTCATATGGGCCATTTACTT 457701 Query 47590 TAGCGAGTTCA--CAACTTGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTAT 47647 || | |||| | || | ||| || ||| |||||| || |||||||||||| || | Sbjct 457700 GTGCTAATTCAACCGACAT--TTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCT 457643 Query 47648 GTTTAGATTCCTT-GCTTCTGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTG 47706 |||| |||| || ||||| |||||| | ||||| |||||||||| Sbjct 457642 ATTTA-ATTCTTTAGCTTCCTCAGATTCATATGGATATCTTAAAAGCATAAATGTATCTG 457584 Query 47707 CCAATCCTTGAACACCAATACCAATTGGTCTATGAGTTTTATTAGAAAACTCAGCTTCTG 47766 | |||||||| || || || ||||| |||||||| ||||||| || ||||||||| Sbjct 457583 CTAATCCTTGTACTCCTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTT 457524 Query 47767 GTAATGGATATTTGTTTATATCTATAATTTTATTTAGANNNNNNNNNNNNNNNNNNACAA 47826 | ||| || | ||| | || |||||||||| || | || Sbjct 457523 TAATTGGGTAATAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAA 457464 Query 47827 TTTCTCTTAATTTATTAAAATCAAA--CTTGTTATT---TAT-AACAAACCTATTAAGTG 47880 | || |||||| ||||||| ||| ||| || || ||| |||||| || | || Sbjct 457463 TATCGTATAATTTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATG 457404 Query 47881 CTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATTTCAG 47940 | || || ||||||||||| |||||||| |||| || ||||||| || |||||| Sbjct 457403 CAATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCAC 457344 Query 47941 CACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATG 48000 ||||| ||||| |||||| || || || ||||||| |||||| ||||||| Sbjct 457343 AACATAAATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATG 457284 Query 48001 CGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCC 48060 | || || || | |||| | ||| |||||||| || || || | |||| || Sbjct 457283 CATCTTTATATAACATATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACC 457224 Query 48061 AAACAGTCCTAGCCTTTATAACAGCTCT---AGCTTTATTATCATGTTCGTATTTAGTAT 48117 | | | || | | | ||| | | | | || ||| || | ||| ||||| |||| Sbjct 457223 ATAAA-TCTTGTGCA--AGAACTGTTTTTTTACCTAAATTTTCTTCTTCATATTTTGTAT 457167 Query 48118 ATAACTTCTCAAATTCATCCCCATACACATTATCT-AACCCAGGACATTCATTAGGACAC 48176 |||| || |||||||| || || | | ||| || || || |||||||||||||||||| Sbjct 457166 ATAATTTTTCAAATTCTTCACCCCA-AGATTCACTTAAACCTGGACATTCATTAGGACAC 457108 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 || || | ||| | | || | ||| || || ||||||||| ||| |||| ||| | | Sbjct 457107 ATTAAAGTCCAGTGTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATA 457048 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||||||||| | || ||||| |||||| || || ||| || | | || | | Sbjct 457047 GCATAAAATAAATCACGAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAA 456988 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 || || | ||||||| |||||||| || | ||||| || | |||| || ||| Sbjct 456987 AATTCAAAAATATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTT 456928 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 || |||||||||| |||||| || |||| ||| |||||||||||||||| || | Sbjct 456927 CCGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAAC 456868 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATAT---AACTTCCACTAGCTCTTATATTACTA 48473 ||||||||||||||||| ||||| ||||| || || | ||| |||| Sbjct 456867 CCATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGTC---CTCGAATATCTTGT 456811 Query 48474 ATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCA 48533 | | || ||||||||| ||||| ||||| || | ||||| | || | || ||| Sbjct 456810 ACAGCAACACCTATACCTCCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCA 456751 Query 48534 TAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGA 48593 | || |||||||| |||| | |||| ||||| |||||| ||||||||| || Sbjct 456750 AATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAACATGAAGACATTTGGGGT 456691 Query 48594 TGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAAC 48653 ||||| |||||||||||||| |||| |||||| |||| |||| | || | Sbjct 456690 CTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATT 456631 Query 48654 AATTTATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACG 48712 || | || ||||| | | | || ||||| || | |||||| ||||||||||| | Sbjct 456630 AAATGGTAAGTTTCTAAAGCTTTTTCAATATCATCAAT-ATGTATTCCTATAGATACTCT 456572 Query 48713 CATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTT 48772 |||||| | || |||||| | ||||| |||||| ||||| || || | || || | Sbjct 456571 CATTAATAAATGTTGAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCT 456512 Query 48773 TTCCAATGTTTTAAAACCAAAATA 48796 || ||||||||||| |||||||| Sbjct 456511 CTCTAATGTTTTAAATCCAAAATA 456488 >seq4 Length=1653377 Score = 324 bits (358), Expect = 2e-83 Identities = 615/893 (69%), Gaps = 23/893 (3%) Strand=Plus/Minus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||||||||| || |||||||| |||||||||||||| |||||||| | ||| ||||| | Sbjct 1529752 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAA 1529693 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAA---TTCTAA 18785 ||||| || ||||||||||||| || | | ||| | ||||| |||||| Sbjct 1529692 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAA 1529633 Query 18786 TAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTAT 18845 || | | ||| || ||||||| |||||| ||| | |||||||||| || Sbjct 1529632 TAATCG---ATCAGCAACAAATTCGATATATTGAGACATAAGTCTTGAATTCATTCCAAT 1529576 Query 18846 TAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATAT 18905 ||| | | ||||| | || || |||| | ||||| | ||||| ||| | Sbjct 1529575 TAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAAC 1529516 Query 18906 AATAGATACAACTCTATCTTCATTAGGAGGGTATAG---AAGATGTTTAAACATCAAACA 18962 ||| | ||| ||||| | | | ||| || | | | || || ||||| Sbjct 1529515 TATATTTTGAACAACCTCTTC--TGGTAATTTATTTTCTAACAAGCTATAA-ATTAAACA 1529459 Query 18963 TGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACC 19022 |||||| |||| ||| || || ||||| || ||||||||| |||||||||||| Sbjct 1529458 ATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACC 1529399 Query 19023 AGGCATCAGTCCTCtttttttt--AACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 | | | | | | || ||||| ||||| ||||| | | ||| |||| ||| ||| Sbjct 1529398 ATGTA--ATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAAT 1529341 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || |||| ||| || | |||||| || || | || ||| || Sbjct 1529340 ATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA---GAATTTGTATCATTG 1529284 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 |||||||| |||||| || || ||||||| ||| || | || |||| || | Sbjct 1529283 ATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGA 1529224 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 |||| || | | ||| | ||| |||| ||| ||| || |||||||| || || Sbjct 1529223 AATAAATTTAACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTT 1529164 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || ||||| |||||||| | ||| || ||||| ||||| | | ||||| |||| Sbjct 1529163 TCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATT 1529104 Query 19321 TGTACTTCACTACAAAATCTTTCGA-CCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 ||||| || || ||||| || | | |||||||||| |||||||||||||||||||| Sbjct 1529103 TGTACCTCTCTTAAAAAT-TTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGC 1529045 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAA-T 19438 |||||||||||| |||||||| |||||||||||||||| | ||||| | ||| || | Sbjct 1529044 AAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTAATTT-TTCAAAGT 1528986 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | || | ||| | |||||||||| |||||| | |||||||| || || || ||||||| Sbjct 1528985 CTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTT 1528926 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||| | ||||||| ||| |||| |||||| || ||||||| || Sbjct 1528925 TATAAAAATTCCATACCTCAGGATACATAATAGGATGTAATGTAAATCTACTT 1528873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108455708360