Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq4 269 3e-67 >seq4 Length=1653377 Score = 269 bits (298), Expect = 3e-67 Identities = 594/882 (67%), Gaps = 19/882 (2%) Strand=Plus/Minus Query 36823 TTTTTTAAAAATCTTCATCTAACGTAAATTTTATTTCCTTATTACTATTCATAACTCCCA 36882 ||| |||||||||| | ||| | |||| | ||| || | | |||||| || Sbjct 1529813 TTTCTTAAAAATCTGTGTTTAAAGAAAATACTTGTTCTTTTCTTTGAGCCATAACACCTG 1529754 Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 ||||||||| ||| |||||| |||| || |||||||| ||||||| || ||||| Sbjct 1529753 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTA 1529694 Query 36943 TTTCCATAAAATCAAATGGATTAGATGTATTATATA---TAGTACTACATGATAATTCCT 36999 ||||| || ||||||||| || || | | ||| || || | | |||| Sbjct 1529693 AGTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTC-- 1529636 Query 37000 TCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAA 37059 | | || | ||| ||||||||||| || |||| | |||| ||| | || || |||| Sbjct 1529635 TAATAATCG-ATCAGCAACAAATTCGATATATTGAGACATAAGTCTTGAATTCATTCCAA 1529577 Query 37060 TTAGTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTTTAA 37119 ||| | || | | || || |||| | |||||| | || || ||||||| Sbjct 1529576 TTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAA 1529517 Query 37120 CTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACATG 37179 ||||||| || ||| ||||| | | || || ||| | || | | |||||| Sbjct 1529516 CTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCTATAAATTAAACAAT 1529457 Query 37180 CAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTG 37239 |||||| ||||| |||||||| ||||| || ||||||||| ||| ||||| || Sbjct 1529456 TAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACCAT 1529397 Query 37240 GCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATAC 37299 | | | | | |||||||| |||||||||||| |||| |||| ||| || || | Sbjct 1529396 GTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATATTC 1529337 Query 37300 CTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAATCC 37359 |||| || |||| ||||||| | | | | |||| || | |||| |||| Sbjct 1529336 CTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAAG---AATTTGTATCATTGATCC 1529280 Query 37360 AtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAAGA 37419 |||| || ||| ||| || ||| | | || ||||||| || | || | Sbjct 1529279 ATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAAATA 1529220 Query 37420 GAAAGtttttttCT-TCACT-ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 || || ||| | || ||| | |||||| ||||||||| ||||||||| |||| Sbjct 1529219 --AATTTAACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTTC 1529162 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 ||| || |||||||||| |||||| |||||| |||||| | |||||| || ||| Sbjct 1529161 AGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATTATTTG 1529102 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 || || | ||||| | |||| || ||||| ||||| ||||||||||||||||| Sbjct 1529101 TACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCAAA 1529042 Query 37598 GAAAGCAAGAACATATTTTATAAAATGTCTTTCAT---CATTTGATAATTTTTTCCAATC 37654 || || | |||| ||||||||||||| |||||| |||| |||||||| | || Sbjct 1529041 AAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATT---TAATTTTTCAAAGTC 1528985 Query 37655 ATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 || | ||| |||||||||| | || ||| | |||||||| Sbjct 1528984 TTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAA 1528943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592316437205960