Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq11 114 3e-20 >seq11 Length=733468 Score = 114 bits (126), Expect = 3e-20 Identities = 180/253 (71%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 133942 TGCATGGAATGTTGGTGAACTAGATAAAATGACTTTGCCACCATGTCATTGCTTTAGTCA 134001 |||||||||||| || ||||| ||||| | || || || |||||| || |||| Sbjct 126212 TGCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCA 126153 Query 134002 ATTCTTCGTAAATGACGGTAAGTTATCATGTATTCTATATCAACGTAGCTGTGATCTA-T 134060 ||| | || ||| || || |||||||||||| | |||||||| |||||| || Sbjct 126152 ATTTTATGTTTTTGATGGAAAATTATCATGTATTATGTATCAACGATCTTGTGATTTAGG 126093 Query 134061 TCTTAGGAGTACCATTCAACATTGCTTCATATTCATTACTAACTCATATGTTAGCACAAG 134120 |||| || || ||||| || |||||||| ||||| || | || ||||| ||||||||| Sbjct 126092 TCTT-GGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAG 126034 Query 134121 TTTGTGGGTTAGAAGTTGGTGAGTTTGT--ATGGATGGGTGGAGATGTTCACATTTATAA 134178 | ||| ||| || | ||| ||| | ||| || ||| ||| ||| ||||||| Sbjct 126033 TATGTAATTTACAACCAGCTGAATTTATACATGTAT--TAGGAAATGCTCATGTTTATAA 125976 Query 134179 AAATCACGTAGAA 134191 ||||| || ||| Sbjct 125975 TAATCATGTTGAA 125963 Score = 96.9 bits (106), Expect = 8e-15 Identities = 265/389 (68%), Gaps = 19/389 (5%) Strand=Plus/Minus Query 150398 TTAGTTGGTGAACCAGGTGTTGGTAAAACACAAATCGTTGACGGATTAGC-ACAACGCAT 150456 ||| | || || || ||||||||||||||| ||| ||||| || || || | || | || Sbjct 272619 TTATTAGGAGATCCGGGTGTTGGTAAAACAGCAATAGTTGAAGGGTTGGCTATAAAG-AT 272561 Query 150457 CGCTAATGGTGATGTTCCAGATTCTATGAAAGATGTTGAAA--TTCTTTCTTTGAATATG 150514 | | || ||||| || ||||| || ||| | | |||| | ||||||| ||||| Sbjct 272560 TGTACAAGGAGATGTACCTGATTC-ATTAAA-AGGAAGAAAGTTAGTTTCTTTAGATATG 272503 Query 150515 GGTGCATTTACTGCTGGTACTAAGTATCGTGGTGAATTCGAAGAACGTGTAGA--CAATT 150572 |||| | ||||||| |||| ||| | ||||| || ||||| ||| || | | ||| Sbjct 272502 TCATCATTAATTGCTGGTGCTAAATATAGAGGTGATTTTGAAGAGCGTTTAAAATCTATT 272443 Query 150573 TGCTACAAGAACTAAAAGAACGCGATG---ATGTTATTCTGTTCATCGATGAAATCCATA 150629 | || ||||| | | || || | | || || |||| || ||||| || |||| Sbjct 272442 T--TAAAAGAAATTCAGGATTCAGAGGGACAAGTAGTTATGTTTATTGATGAGATACATA 272385 Query 150630 CTATTATGGGTGCTGGTGCGACTGGC-GGCGGTTCTTTGGATATGAGCAATATGTTAAAA 150688 | || | ||||||||||| | | || | ||| | || ||| | ||||| |||||| Sbjct 272384 CGGTTGTCGGTGCTGGTGC-AGTAGCAGAAGGTGCATTAGATGCAGGTAATATATTAAAA 272326 Query 150689 CCTGCT-CTATCTCGCGGTGAAATTCG-TGTCATCGGTGCAACAACCTACGATGAATATC 150746 || ||| || | || || ||| | | ||| ||||||||||| || ||||||| Sbjct 272325 CC-GCTATTAGCCCGAGGAGAATTAAGATGT-ATCGGTGCAACGACTGTTAGTGAATATA 272268 Query 150747 GTAAACACATTGAAAAAGATGCAGCACTA 150775 | || || ||||||||| |||| || Sbjct 272267 GACAATTTATAGAAAAAGATAAAGCATTA 272239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147589679528402