Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq5 129 5e-25 seq8 102 7e-17 >seq5 Length=1684710 Score = 129 bits (142), Expect = 5e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28551 AAAATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCT 28610 ||||||||||| ||||||||||||||||| || ||||| ||||| || ||||| Sbjct 156533 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCA 156592 Query 28611 TCAGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGAT 28670 ||||| || | | || | || ||||||| || ||||| ||| | ||| ||| Sbjct 156593 TCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 156652 Query 28671 CAACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 28730 ||||| ||| | || ||||| || |||||||| |||||| | |||| | | || ||| Sbjct 156653 CAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTAT 156712 Query 28731 AACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 ||||||||||||||||| || | || ||||| || Sbjct 156713 AACATTCAAAAAGAATCAACCTTACATTTGGTAATA 156748 >seq8 Length=956651 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || |||||||||||||| || ||||| || || || ||||| || Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || || ||||| || | || ||||| Sbjct 415345 GATACTATTGAAAATGTTAAAGCAAAAATTCAA-GATAAAGAAGGTATCCCACCTGATCA 415403 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 || ||| | || ||||| || |||||||| |||||| | ||| | | |||||||| Sbjct 415404 GCAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAA 415463 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGG 28780 || ||||||||||| || | || | || ||||||||| ||||||| Sbjct 415464 TATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGG 415511 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425404545953571