Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq8 434 5e-117 >seq8 Length=956651 Score = 434 bits (480), Expect = 5e-117 Identities = 1011/1497 (68%), Gaps = 62/1497 (4%) Strand=Plus/Minus Query 25059 ATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGTTGGCATTAATG 25118 |||||||||| |||||||||||||||| ||||| ||||| || ||||||||||| || Sbjct 457919 ATGGTTCAAAGGATTCATTATTTCCTAAAATTTGTGAAGTTGAAGCTGTTGGCATAGGTG 457860 Query 25119 CTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAATTTATCCCAAT 25178 ||| | || |||||||| || |||| || || | || ||||||| |||||||| Sbjct 457859 CTAAAAGAAGAGAATTTCTTAATCCATGCATACTTATTTTTTTTTTTAATAAATCCCAAT 457800 Query 25179 CTAAAT---TATTATCTAACTCGATATCGTTATCATATAAATCAAATTGTAACAATCCA- 25234 | ||| ||||||||| | | | || || ||| ||||||||||| | ||| Sbjct 457799 CCCAATATTTATTATCTACTT---TTGCATTC-CACATA--TCAAATTGTAATATTCCTT 457746 Query 25235 --CTTGCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCCATATCTT 25292 ||||||| | ||||| | | | |||| || ||| | ||| | || Sbjct 457745 TGCTTGCTGGACTACCTTGAT---ATGATTCATATGGGCCATTTACTTGTGCTAATTCAA 457689 Query 25293 TTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAAAACTTAG 25352 || ||||| ||||||||||||||| ||||||| || | | ||||| |||| Sbjct 457688 CCGACATTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAG 457629 Query 25353 CTTTTTCTCCATCGAAAGCAATTTCCATTAAGGCG--AACGTATCTGCTAATCCCTGAAC 25410 ||| || || | | | | | | || || || |||||||||||||| || || Sbjct 457628 CTTCCTCAGATTCATATGGATAT--CTTAAAAGCATAAATGTATCTGCTAATCCTTGTAC 457571 Query 25411 TCCTAATCCAACTGGACGATGTTTATTATTACTTATCTCAGTTTCTGATGTTGGATAGAA 25470 ||||| ||||| || | |||| | ||||| | | |||| |||| |||| || | Sbjct 457570 TCCTATTCCAATAGGTCTATGTCTTTTATTTGATTTTTCAGCTTCTTTAATTGGGTAATA 457511 Query 25471 ATTTGTATCGATCACATTATCTAGATTCTTTATGGCAAGCTTTGTGTATTTTCTCAACTC 25530 |||| | || || | ||||||| ||| | | || ||| ||| | || | Sbjct 457510 ATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAA--TTTTAGTAATATCGTAT--- 457456 Query 25531 AATAAAGTCAAAATAAGGCTTATCGTTTATATCTCTTTTTACAAATTTAGATAAAGCGAT 25590 ||| | ||| ||| || ||| | ||||| | ||||||||| |||| || || Sbjct 457455 AATTTTTTAAAATTAAAT----TCTTTTTTTTCTCTATCAACAAATTTACATAATGCAAT 457400 Query 25591 TGATGCTAAATTACAAACAGCTTGTTCTTTCCCGTCA-GAATATTCATTGATCTCGATAC 25649 ||| |||| ||||||||||||| ||| | | || | | ||||||| | || || || Sbjct 457399 TGAAGCTAGATTACAAACAGCTACTTCAT-CAGGTGATGTATATTCAATAATTTCACAAC 457341 Query 25650 ATAAGTTGCTAGATTTGATTACTCCATAATTCTTTTGATTATTGCATGTATTGACAAT-A 25708 |||| || ||| |||| ||| || |||| ||||||||| | ||| ||| | Sbjct 457340 ATAAATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATT-ACATGCA 457282 Query 25709 TCTTTATATCCTAAATATGGCGTTCCTGTTTCAATTTGAGATACTAAAATTTTCTCCCAA 25768 ||||||||| | |||||| || ||||||||||| | ||| || ||| Sbjct 457281 TCTTTATATAACATATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCAT 457222 Query 25769 AGTTCTCTCGCTTTTACT--TTCTTTACG-AAGTTACCATCAGAAACAGCTCTTTCGTAA 25825 | ||| || ||| || ||||| || || | || || | || || Sbjct 457221 AAATCTTGTGCAAGAACTGTTTTTTTACCTAAATTTTCTTCTT---CATATTTTGTATAT 457165 Query 25826 AGTTCAACAAATTCTTGATTTATTTTCTCAGAGAAAAGTTTGCCATATTTATTGAGAATA 25885 | || ||||||||| | | || || || | || | || | | Sbjct 457164 AATTTTTCAAATTCTTCAC-------CCCA------AGATTCACTTAAACCTGGACATTC 457118 Query 25886 ATATTTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCT 25945 || | ||||| | |||| ||| | ||||| | ||| ||| |||||||||||| Sbjct 457117 AT--TAGGACACATTAAAGTCCAGTGTTTATTTTCTTTAACCCTCTTCATAAATAAATCA 457060 Query 25946 GGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTT 26005 || | ||| || |||||||||||||| | ||||| | ||||||||| |||||||| ||| Sbjct 457059 GGTACCCATATAGCATAAAATAAATCACGAGCTCTTAATTCTTCTTTACCGTGATTTTTT 457000 Query 26006 TTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTA 26065 ||| |||||| || ||||||||||| ||||||||||| || | ||| | ||||||| | Sbjct 456999 CTTAAATCTAAAAATTCAAAAATATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAA 456940 Query 26066 CCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAAC 26125 |||||||||||||| |||||||||||||| |||||||| || ||||| |||||| | ||| Sbjct 456939 CCTTTTCTTTTTCCGCCACCTTGATCTACATATCTTGCTGTATCATTAAAAACTCTTAAC 456880 Query 26126 ATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCT-TGGATCCTGTCGATCT 26184 ||||||||||| ||| |||| | || || || | ||| | | || |||| || Sbjct 456879 ATTGGAACTAACCCATTTGATATACCATTAGTTCCTCTAATATAAGAATTTTGTC-CTCG 456821 Query 26185 AATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAAT-CTG 26243 |||||| || || || ||| || || || || ||| || |||||| | || Sbjct 456820 AATATCTTGTACAGCAACACCTATACCTCCTGCTGTTTTACTGATCAATGCACATTGCTT 456761 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAG 26303 || ||| || || || |||| ||| |||| ||||||| |||||||||||| |||| Sbjct 456760 TAA-TGTTTCAAATATACCTTCTATTGAATCAGATTTCATTGATAATAAAAAACATGAAG 456702 Query 26304 ATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATATC 26363 | | ||| | | |||||| |||||||||||||| || |||||||||||| ||||| Sbjct 456701 ACATTTGGGGTCTTGGTGTTCCCGAATTAAATAATGTAGGAGTAGCATGAGTAAAATATT 456642 Query 26364 CTTCACTCA-AAGCTGTATAAGTTTCAAGAACTTCATCGATATTGTAATTACTAACTTCA 26422 || | || | || |||||||| | | ||| || |||| | | || | | | Sbjct 456641 TTTGAGACATTAAATG-GTAAGTTTCTAAAGCTTTTTCAATATCATCAATATGTATTCCT 456583 Query 26423 ATAGCTGTTCTTAACCACATATATTGAGGTCGTTCAATTACATTATTTTCCGCATCTCTA 26482 |||| | ||| | | | || |||||| |||||||| | ||||| | || || Sbjct 456582 ATAGATACTCTCATTAATAAATGTTGAGGACGTTCAATAATTTTATTAT--TAATACGTA 456525 Query 26483 ATCAAATAAGATTTTTCTAAAGTTTTCAATCCAAAATAATCATGATTGAAATCTCTT 26539 || || ||||| | ||||| ||||| |||||||||||||||| ||| ||||||||| Sbjct 456524 AT-AAGTAAGACCTCTCTAATGTTTTAAATCCAAAATAATCATAATTAAAATCTCTT 456469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253039848887675