Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq2 143 4e-29 >seq2 Length=2392314 Score = 143 bits (158), Expect = 4e-29 Identities = 478/734 (65%), Gaps = 20/734 (3%) Strand=Plus/Minus Query 47796 AATAACAAAATCATCAGGTTCTTCTTGTTGAAGCATTAACCACATAGCCTCGACATAATC 47855 |||||||||||||| ||| | |||||| | |||||| | || || | |||||||| Sbjct 1532946 AATAACAAAATCATTAGGAGTTGTTTGTTGTAACATTAAATATATTGCATGTACATAATC 1532887 Query 47856 TCTGGCATGTCCCCAGTCACGAAGTGCATCAAGATTTCCTAGATATA--AACAGTCTTGC 47913 | | ||||| ||||| || | || || ||||| ||| |||| ||||| ||| || ||| Sbjct 1532886 TTTTGCATGACCCCAATCTCTAAATGTATCAATATTCCCTA-ATATAATAACTGT-TTGA 1532829 Query 47914 TTACCTTCAGAGATTGCTTTTAATGCTCTTGTAATCTTACGAGTTACAAAAGTTTCACCA 47973 | || | | ||| | || || ||||||| || || || || ||||||||| Sbjct 1532828 ATTTTTTTAAATATTTTTGCTATACCTTTTGTAATTTTTTTTGTAACGAATGTTTCACCA 1532769 Query 47974 CGTCTTGGAGATTCATGATTAAAAAGAATACCA-CTACAGGCATACATTCCGTATGATTC 48032 ||||||||| |||||||||||| | |||||| |||| | |||| |||| ||| Sbjct 1532768 CGTCTTGGACTTTCATGATTAAATAATATACCATTTACA-CAAAACATATTATATGCTTC 1532710 Query 48033 ACGATAGTTCTTTACTATCCAGTACCCATAGAGTTTTGCAACACCATAAGGAGAACGTGG 48092 | ||| || ||| ||| | | | ||| | |||||| | |||||||| || ||| Sbjct 1532709 TCTATAATTTTTTGTTATATAATGACTATATAATTTTGCTATCCCATAAGGTGAGACTGG 1532650 Query 48093 ATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCA----CCTTACCATAAAGTTCAC 48148 || || ||||| | || | || | | | ||| | |||||||| | ||| Sbjct 1532649 ATTAAATGGTGTATTTTCATTTTG-GCATTGACTTTGAATATTATTACCATATAATTCTG 1532591 Query 48149 TGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGCAAACGGACTGCCTCAA 48208 || || || | ||| | | ||| || |||| || | ||| || | Sbjct 1532590 ATGTTGAAGCATTATAAAATTTTA---TATTATCAATCTGTGATAATTTAATTGCTTCTA 1532534 Query 48209 GCACTCTCAGGGTGCCTATGGCATCTGT---CTGACCAGTATACTCGGGCATCTCAAACG 48265 | ||| | || || || | |||| || | ||||| || || | || || Sbjct 1532533 ATATTCTTAATGTACCAAT---AGCTGTACATTGTGCTGTATATTCAGGTAATTCGAAAC 1532477 Query 48266 AAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGTTGAACCTGCTGAA 48325 || ||||||||||| ||||| | | |||||| || |||| ||||| | | | Sbjct 1532476 TCACTTTTACATGACTTTGTGCAGCTAAATTATATATTTCATTTGGTTTTATTTTAGATA 1532417 Query 48326 TAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAATTTTAATTGATCAT 48385 | | | || ||| || || ||| || |||||||| || ||||||| ||| Sbjct 1532416 TTAAAGAAAATATATTACTATTATCAAGTAAATCACCATAATGTAAATTTAATTTTTCAA 1532357 Query 48386 AAATGTGATCAATTCTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCT 48445 | || ||||| ||||| | |||||||| | | | || | | | ||||||||| | Sbjct 1532356 ATATATGATCTATTCTTTTTGTATTAAATGTACTACACCTCCTAATCACACCATGAACTT 1532297 Query 48446 CATACCCCTTTTCAAGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAG 48505 |||| || || || | ||| | ||| || ||||| |||||||||||||| |||||| Sbjct 1532296 CATATCCTTTATCTAAAAGTAATTCACTCAAATATGACCCATCTTGTCCTGTGATACCAA 1532237 Query 48506 TGATTAAAGCAACT 48519 |||| |||||| Sbjct 1532236 ATATTAGGGCAACT 1532223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665493992384680