Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5 208 1e-48 seq8 187 4e-42 >seq5 Length=1684710 Score = 208 bits (230), Expect = 1e-48 Identities = 197/250 (79%), Gaps = 5/250 (2%) Strand=Plus/Minus Query 193151 TACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTC 193210 ||||| ||| || || | ||||| ||| |||||||| ||||| ||||| ||| || Sbjct 156745 TACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTC 156686 Query 193211 TAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTG 193270 |||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| Sbjct 156685 TAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTG 156626 Query 193271 TATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTT 193330 ||||| | ||| | |||| ||| ||||| || | ||||| || ||||| || ||||| Sbjct 156625 GATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTT 156566 Query 193331 ACCTGTTAGCGTTTTTACAAATATTTGCATTTTATTA---GTAAAA--TAATTATTTTAA 193385 || |||| ||||||||||| ||||||||||| || |||||| ||| || ||| | Sbjct 156565 TCCGGTTAATGTTTTTACAAAGATTTGCATTTTCGTAAATGTAAAAAGTAAATAATTTGA 156506 Query 193386 ATAATATATA 193395 | || ||||| Sbjct 156505 AAAAAATATA 156496 >seq8 Length=956651 Score = 187 bits (206), Expect = 4e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 ||| ||||| |||| | || | ||| ||||| | ||||| |||||||| || || Sbjct 415512 ACCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGA 415453 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| ||||| ||| |||||||||||||| |||||||||||||| || |||||||| || Sbjct 415452 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 415393 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || |||||||||||||| ||||| | ||| | |||| ||||||||| || | || || Sbjct 415392 GATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGAC 415333 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || ||||| ||||||| |||||||| || |||||||| Sbjct 415332 ATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 149 bits (164), Expect = 1e-30 Identities = 127/157 (81%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || |||||||| ||||| ||||| ||| |||||||||||||| |||||||||||||| Sbjct 414840 ATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTT 414781 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || |||||||| || || |||||||||||||| ||||| | ||| | |||| ||||||| Sbjct 414780 TGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTA 414721 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTG 193335 || || | || || || ||||| || ||||| |||| Sbjct 414720 TCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTG 414684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899653848961680