Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq4 260 2e-64 seq8 168 1e-36 seq5 140 5e-28 >seq4 Length=1653377 Score = 260 bits (288), Expect = 2e-64 Identities = 574/847 (68%), Gaps = 27/847 (3%) Strand=Plus/Minus Query 17864 TTTTTG-TATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATATTAA 17922 |||||| || ||| | ||| | || || ||||||||||| ||||||| || |||||||| Sbjct 1529752 TTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTAA 1529693 Query 17923 ATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTATAA 17982 | ||| || ||||||||| | | | || ||| ||| | ||| Sbjct 1529692 GTCCATCCAACTAAATGGATTTTTTGAATGGAAAACTTTAGAACAACCTAAACATTCTAA 1529633 Query 17983 TAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGC-AATTCATACCTAGTA 18041 ||||| ||| || |||||||||| |||||| ||||| || || ||||||| || | || Sbjct 1529632 TAATCGATCAGCAACAAATTCGATATATTGAGACAT-AAGTCTTGAATTCATTCCAATTA 1529574 Query 18042 GTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTATTA 18101 |||||| || ||| ||||||| | | |||| ||||| | ||||| | || Sbjct 1529573 AATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACTA 1529514 Query 18102 TGTTTATTAC--CCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAACA 18159 | ||| || ||| || ||| |||||||| || ||||| | |||||| Sbjct 1529513 TATTTTGAACAACCTC--TTCTGGTAATTTATTTTCTAACAAGCTATAA---ATTAAACA 1529459 Query 18160 CGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAACCC 18219 |||||| |||||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 1529458 ATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACC 1529399 Query 18220 GGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAATAT 18279 | | | || | |||||| | ||||||||| | ||||| | | ||| ||||| Sbjct 1529398 ATGTAATTTATTTTGTTTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATAT 1529339 Query 18280 ACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAGT-A 18338 || || || || || |||| | ||||||||||||| | |||| | ||| | | Sbjct 1529338 TCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAAAA--GAATTTGT--ATCATTGA 1529283 Query 18339 TCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGCATTAA 18398 ||||||| ||||||| | ||| || |||||| | || ||||||| || Sbjct 1529282 TCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAA 1529223 Query 18399 ACAAAT----CATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATAC 18454 | |||| | ||| ||||| ||| || |||||| | || ||||| ||| ||| Sbjct 1529222 ATAAATTTAACCTCTCTTTCT----CATCCTTAATATAATTATCAATTAATAAACTATAT 1529167 Query 18455 ATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGA 18514 ||||||||||||| |||| | |||||| |||||| |||||| | | || || Sbjct 1529166 GTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTCAATT 1529107 Query 18515 TATTGAATCTCGCTATAAAATCTTTCTA-CCAAATTCTCATTAACTATACCGTCAGCAGA 18573 ||| | ||| || ||||| || ||| ||||||| || ||||| || ||| || Sbjct 1529106 ATTTGTACCTCTCT-TAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGC 1529048 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC-C 18632 ||| |||||||| || |||| ||| || |||||||||||||| | || | ||| ||| Sbjct 1529047 TGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTTA-ATTTTTCAA 1528989 Query 18633 ATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCCT 18692 | || | | ||| |||||| ||| | ||||| | |||||||| || | ||| || | Sbjct 1528988 AGTCTTTCAAATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTT 1528929 Query 18693 GTTTGTA 18699 ||| || Sbjct 1528928 TTTTATA 1528922 >seq8 Length=956651 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | |||||||| || |||||||| || || | || |||||| ||| Sbjct 415285 ATGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCT 415344 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || ||| ||||| |||||||||||||| || || || || || Sbjct 415345 GATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAG 415404 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| |||| ||| || || || | |||||| ||||| ||||| ||||||||| Sbjct 415405 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAAT 415464 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 ||| ||||| | || | |||||||| |||||||||||||| ||| Sbjct 415465 ATACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGGT 415512 Score = 111 bits (122), Expect = 2e-19 Identities = 123/164 (75%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 155850 GGAAAAACTATTACATTAGAAGTCGAAGATTCTGATAATATTTTAAACGTGAAAAATAAA 155909 |||||||| || || | || |||||| ||||||| |||| ||| || ||| ||| Sbjct 414686 GGAAAAACAATCACTCTTGATGTCGAACCATCTGATACTATTGAAAATGTTAAAGCAAAA 414745 Query 155910 ATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAGCAG 155969 || |||||||||||||| || || || || || |||||||| |||| ||| || || || Sbjct 414746 ATTCAAGATAAAGAAGGTATTCCACCTGATCAGCAAAGATTAATTTTTGCTGGAAAACAA 414805 Query 155970 CTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGA 156013 | |||||| |||||| ||||| || ||||| ||| ||||| Sbjct 414806 TTAGAAGATGGCAGAACATTATCTGACTATAACATACAAAAAGA 414849 >seq5 Length=1684710 Score = 140 bits (154), Expect = 5e-28 Identities = 142/185 (77%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 ||||||||||| ||| | |||||||| || |||||||| ||||| | || || ||| Sbjct 156533 AAAATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCA 156592 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| ||| ||| || ||| ||||| |||||||||||||| || || || || Sbjct 156593 TCAGATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGAT 156652 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||||||||| |||| ||| || || || | |||||| |||||||||||| || ||| Sbjct 156653 CAACAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTAT 156712 Query 156000 AATAT 156004 || || Sbjct 156713 AACAT 156717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731871551728400