Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq4 300 3e-76 seq8 190 4e-43 seq5 183 6e-41 seq1 84.2 4e-11 >seq4 Length=1653377 Score = 300 bits (332), Expect = 3e-76 Identities = 556/805 (69%), Gaps = 30/805 (4%) Strand=Plus/Minus Query 49573 CTTCTAATGATATTAAATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTC 49632 ||| ||| |||||||| | ||| || |||||||||||| | || || | ||| Sbjct 1529708 CTTGTAACGATATTAAGTCCATCCAACTAAATGGATTTTTTGAATGGAAA-ACTTTAGAA 1529650 Query 49633 CTATCAATACATA-TAATAATCTATCGGCTACAAATTCAACATATTGTGACATTAATTCA 49691 | | | | |||| |||||||| ||| || |||||||| | |||||| ||||| | | Sbjct 1529649 CAACCTAAACATTCTAATAATCGATCAGCAACAAATTCGATATATTGAGACATAAGTCTT 1529590 Query 49692 CAATTCATACCCAATAATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttct 49751 ||||||| || | ||| | | | ||||| | ||| ||||||| | |||||| ||| Sbjct 1529589 GAATTCATTCCAATTAAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCA 1529530 Query 49752 acagcttgtttaattatcataattatattattttttgataatttatatt-taatatgatt 49810 || |||| ||||| ||| | | | | || || |||||||| || ||| | | | Sbjct 1529529 ACTGCTTCTTTAACTATATTTTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCT- 1529471 Query 49811 cgcatatattaaACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATT 49870 ||| |||||||| |||||| || ||||| || || |||||| || |||||||| Sbjct 1529470 ---ATAAATTAAACAATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATT 1529414 Query 49871 ACTAAAAGTTAATCC-TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAAC 49929 |||||| ||||| || || ||| || | | ||||||| ||||||||||| ||||| Sbjct 1529413 ACTAAATGTTAAACCATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAAC 1529355 Query 49930 TACTAGAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTA 49989 | | | ||| ||||| || |||||||| ||| |||| |||||| | ||| | | Sbjct 1529354 TTCCACTAAATAATATTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGA 1529297 Query 49990 ATTTATCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATAT 50049 |||| | ||| ||||| || ||||| |||||| ||||| || | ||||||| Sbjct 1529296 ATTTGT-ATCATTGATCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATAT 1529238 Query 50050 TTTCTATAGCTTTAAAT-AATTCA-----tttttttCATNNNNNNNNNNNNNNNNNNNNN 50103 |||| ||||| | |||| |||| | | ||| |||| Sbjct 1529237 TTTCAATAGCATGAAATAAATTTAACCTCTCTTTCTCAT------CCTTAATATAATTAT 1529184 Query 50104 NNATTAATAAAGAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAA 50163 ||||||||| ||| |||||||||||| | ||| | |||||||||||| ||||||| Sbjct 1529183 CAATTAATAAACTATATGTTTCAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAA 1529124 Query 50164 ATTGTCTTGCTTCTGAATA-CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGAT 50222 ||| | | ||||| | || || || || || ||| | | ||||| || || Sbjct 1529123 ATTTTTTGGCTTC-AATTATTTGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAAT 1529065 Query 50223 ACAATACCATCAGATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTA 50282 || || |||||| ||||| || |||||||| || | ||| ||||||||||||||||| Sbjct 1529064 ACTATTCCATCACTAGCTGCAAAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTT 1529005 Query 50283 TCTTTTAAATTTTCCCAAG--ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCC 50340 | ||| |||||| | ||| ||||| ||| |||||||||||| ||||| |||| Sbjct 1529004 ACATTT-AATTTTTCAAAGTCTTTCAA-ATCACTTGATAAATCTATCTCTTCAGCAGTCC 1528947 Query 50341 AAAATGATGCTACGGATTTTTTATA 50365 ||||||| ||| | | ||||||||| Sbjct 1528946 AAAATGAGGCTTCAGCTTTTTTATA 1528922 >seq8 Length=956651 Score = 190 bits (210), Expect = 4e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 ||| ||||| | | ||| ||||||||||| || | ||||| |||||||||||||| Sbjct 415512 ACCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGA 415453 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 |||||||| | |||| || |||||||| |||||||| |||||||| || ||||||||||| Sbjct 415452 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 415393 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||||||||| ||||| ||| ||||| |||| ||| || | ||| || Sbjct 415392 GATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGAC 415333 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||||||||| | || || ||||| Sbjct 415332 ATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 136 bits (150), Expect = 8e-27 Identities = 123/155 (79%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| ||||||||||||| |||| || |||||||| |||||||| |||||||| Sbjct 414840 ATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTT 414781 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||||||||| || |||||||||||||| ||||| ||| ||||| |||| | Sbjct 414780 TGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTA 414721 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || || | ||| || || ||||| || ||||| || Sbjct 414720 TCAGATGGTTCGACATCAAGAGTGATTGTTTTTCC 414686 >seq5 Length=1684710 Score = 183 bits (202), Expect = 6e-41 Identities = 170/216 (79%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 192324 TAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATC 192383 || ||| |||||||| || | ||||| || ||||| |||||||| |||| |||| Sbjct 156748 TATTACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATC 156689 Query 192384 ATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATC 192443 || |||||||| |||||||| |||||||| ||||||||||| || |||||||||||||| Sbjct 156688 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 156629 Query 192444 TTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGT 192503 ||| ||||| ||| ||||| || | |||||| | ||| || || |||||||| || Sbjct 156628 TTGGATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGT 156569 Query 192504 TTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || ||||||||||| | ||| || |||||||| Sbjct 156568 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 156533 >seq1 Length=2470179 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 129708 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 129766 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 731015 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 731073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984479381931150