Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4 286 6e-72 seq8 187 5e-42 seq5 178 2e-39 seq1 84.2 4e-11 >seq4 Length=1653377 Score = 286 bits (316), Expect = 6e-72 Identities = 571/844 (68%), Gaps = 18/844 (2%) Strand=Plus/Minus Query 38830 ATTTTTGGTATTCAGAAACttttttttCGAAAAAGTTTGTTTTTCCTTCTAATGATATTA 38889 ||||||| || || | |||| | ||||| || || ||||||||||||| ||| ||||||| Sbjct 1529753 ATTTTTGATAATCTGCAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTGTAACGATATTA 1529694 Query 38890 AATTCATAAAATCAAATGGATTTTTGGTATTATAATATTTTTCTCCTATCAATACA-TAT 38948 | | ||| || |||||||||||| | | | || | ||| | | | | ||| | | Sbjct 1529693 AGTCCATCCAACTAAATGGATTTTTTG-AATGGAAAACTTTAGAACAACCTAAACATTCT 1529635 Query 38949 AATAATCTATCGGCCACAAATTCAACATATTGTAACATTAATTCACAATTCATACCCAAT 39008 ||||||| ||| || |||||||| | |||||| |||| | | ||||||| || | | Sbjct 1529634 AATAATCGATCAGCAACAAATTCGATATATTGAGACATAAGTCTTGAATTCATTCCAATT 1529575 Query 39009 AATTTAAATGGTAATGCATCATCAATAAATTCtttttctatttctacagcttgtttaatt 39068 || | | | ||||| | ||| ||||||| | |||||| ||| || |||| ||||| | Sbjct 1529574 AAATCACAAGGTAAAGATTCACAAATAAATGATCTTTCTACTTCAACTGCTTCTTTAACT 1529515 Query 39069 atcataattatattattttttgataatttatatt-taatatgattcgcatataGTAAACA 39127 || | | | | || || |||||||| || ||| | | | ||| | |||||| Sbjct 1529514 ATATTTTGAACAACCTCTTCTGGTAATTTATTTTCTAACAAGCT----ATAAATTAAACA 1529459 Query 39128 TGCAAAATCCGTATGTAAACCTTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCC 39187 |||||| || ||||| ||||| |||||| || |||||||||||||| ||||| || Sbjct 1529458 ATTAAAATCGGTGTGTAATCCTTCATCCCTACTAATTAATTCATTACTAAATGTTAAACC 1529399 Query 39188 -TGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAATA 39246 || ||| || | | ||||||| ||||||||||| |||||| | | ||| |||| Sbjct 1529398 ATGTAATTTATTTTGT-TTTTTAAACCAAAATATTGCACAAAAACTTCCACTAAATAATA 1529340 Query 39247 TACCCTCCACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAAAA 39306 | || || ||||| ||| |||| |||||| | ||| | ||||| | ||| | Sbjct 1529339 TTCCTTCGACACATGCATTAGCTACAATTCTTTCAGCAA--AAGAATTTGT-ATCATTGA 1529283 Query 39307 TCCAATTTATGGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTTAA 39366 |||| || ||||| |||||| ||||| || | ||||||||||| ||||| | || Sbjct 1529282 TCCATTTAGCTGCCCATAATGCTTTATTTTTTATTGCTGGTATATTTTCAATAGCATGAA 1529223 Query 39367 ATAATTCATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAATACATTT 39426 |||| | | ||| ||| Sbjct 1529222 ATAAATTTAACCTCTCTTTCTCATCCTTAATATAATTATCAATTAATAAACTATATGTTT 1529163 Query 39427 CAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGCCTTGCTTCTGAATA-C 39485 ||||||||| | ||| | |||||||||||| |||||||||| | ||||| | || Sbjct 1529162 CAGAATGTATATTTTCAACAGCTATTTGAAAAGAATAAAATTTTTTGGCTTC-AATTATT 1529104 Query 39486 TGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCG 39545 || || || || ||| | | ||||| || |||| || |||||| ||||| Sbjct 1529103 TGTACCTCTCTTAAAAATTTACTAGCCAAATTTTCTAATACTATTCCATCACTAGCTGCA 1529044 Query 39546 AAGAATGCTAAAACATATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAG-- 39603 || |||||||| |||| ||| ||||||||||||||||| | ||| |||||| | ||| Sbjct 1529043 AAAAATGCTAACACATGTTTTATAAAATGTTTTTCATTTACATTT-AATTTTTCAAAGTC 1528985 Query 39604 ATTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTT 39663 ||||| ||| |||||||||||| ||||| |||||||| || ||| | | ||||| Sbjct 1528984 TTTCAA-ATCACTTGATAAATCTATCTCTTCAGCAGTCCAAAATGAGGCTTCAGCTTTTT 1528926 Query 39664 TATA 39667 |||| Sbjct 1528925 TATA 1528922 >seq8 Length=956651 Score = 187 bits (206), Expect = 5e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 ||| ||||| | || ||| ||||||||||| || | ||||| ||||||||||| || Sbjct 415512 ACCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGA 415453 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | | || || |||||||| ||||||||||||||||| || || |||||||| Sbjct 415452 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 415393 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || |||||||||||||| ||||| ||| ||||| |||||||| || | ||| || Sbjct 415392 GATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGAC 415333 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||| || ||||| || ||||||||||| | ||| || ||||| Sbjct 415332 ATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| || ||||| | || | || || |||||||| ||||||||||||||||| Sbjct 414840 ATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTT 414781 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || || |||||||| || |||||||||||||| ||||| ||| ||||| |||||| Sbjct 414780 TGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTA 414721 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 172042 || || | ||| || || ||||| || ||||| || Sbjct 414720 TCAGATGGTTCGACATCAAGAGTGATTGTTTTTCC 414686 >seq5 Length=1684710 Score = 178 bits (196), Expect = 2e-39 Identities = 169/216 (78%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 171857 TAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGATAAAGATCGTTCGTC 171916 || ||| |||||||| || | ||||| ||| ||||| || ||||||| || | || Sbjct 156748 TATTACCAAATGTAAGGTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATC 156689 Query 171917 ATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATC 171976 || |||||||| ||||||||||||||||| ||||| ||||| || |||||||||||||| Sbjct 156688 TTCTAATTGTTTTCCAGCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATC 156629 Query 171977 TTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGT 172036 ||| ||||| ||| ||||| || |||||||| | ||| || || |||||||| || Sbjct 156628 TTGGATTTTTGCTTTAACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGT 156569 Query 172037 TTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 ||| || ||||||||||| | || || |||||||| Sbjct 156568 TTTTCCGGTTAATGTTTTTACAAAGATTTGCATTTT 156533 >seq1 Length=2470179 Score = 84.2 bits (92), Expect = 4e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 109121 TAAAATATTTACATAAAATAAAAATAGTACATTGTGATTTAAAACCAGAGAATATATTA 109179 || ||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||| Sbjct 731015 TAGAATATTTACATAAAATAAATATAGTACATAGAGATTTAAAACCAGAAAATATATTA 731073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135445604200