Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8 226 8e-54 seq1 145 2e-29 seq6 123 7e-23 seq11 118 3e-21 seq7 84.2 6e-11 >seq8 Length=956651 Score = 226 bits (250), Expect = 8e-54 Identities = 795/1225 (65%), Gaps = 36/1225 (3%) Strand=Plus/Minus Query 155311 TTTCCAGAGCCGCAAAATAAATTGTCTCAAAGATATATTTATTGACTGTTTTAGCCTCCT 155370 |||| | ||| ||| |||| || || ||||| || | |||| | | |||||| |||| Sbjct 457682 TTTCTAAAGCAGCATAATACATAGTTTCAAATATTCTTCTATTTAATTCTTTAGCTTCCT 457623 Query 155371 CAGATGTAAATGCGATATCCATCTTGAAA-----AATGTGTCGGCTAAACCCTGAACTCC 155425 ||||| | ||| |||||| || ||| ||||| || ||||| || || ||||| Sbjct 457622 CAGATTCATATG-GATATC----TTAAAAGCATAAATGTATCTGCTAATCCTTGTACTCC 457568 Query 155426 AATACCGACTGGGCGATGCCTGTAATTGCTCCTGCTTGT----CTTCTTGT-TTGGGTAA 155480 || || | || | ||| || | ||| || || | |||||| |||||||| Sbjct 457567 TATTCCAATAGGTCTATGTCTTTTATT-----TGATTTTTCAGCTTCTTTAATTGGGTAA 457513 Query 155481 AAATTCACATCAATAATGTTATTTAAATTTGTAACCAATACCTTGGTTACGTCTGCTAAT 155540 |||| |||||||| |||| ||||||| || | | || || | || |||| Sbjct 457512 TAATTTCTTTCAATAATTTTATCTAAATTTCTAGTAATAATTTTAGTAATATCGTATAAT 457453 Query 155541 TTCACATAGTCAAATG--TTTTATCCTC-ATTTACAAACATACCAAGACCAATAGACGCC 155597 || | | | |||| |||| | ||| || ||||| ||| | |||| || || Sbjct 457452 TTTTTAAAATTAAATTCTTTTTTTTCTCTATCAACAAATTTACATAATGCAATTGAAGCT 457393 Query 155598 AGATTACATACCGCAGTCTCCTTGTCGTCGCTGTAT--TCTACAATCTCACAGCACAGGT 155655 |||||||| || || || | | || | ||||| || | ||| ||||| || | | Sbjct 457392 AGATTACAAACAGCTA-CTTCATCAGGT-GATGTATATTCAATAATTTCACAACATAAAT 457335 Query 155656 TAGAACTCTTGATGGTGCCTAAATTCTTCTGGTTAGATTTACTGTTACAAGCATCCTTGT 155715 || || || || || |||||||| || || ||||||||| ||||| ||||| || | Sbjct 457334 TACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGCATCTTTAT 457275 Query 155716 ATAGAATGTATGGGGTTCCTGTCTCCATCTGTGCGTCCAGAATCTTTAGCCAGAGGTCAC 155775 ||| || ||||| || || || || || | | || | ||| | || Sbjct 457274 ATAACATATATGGTACACCAGTTTCAATTTGGCTTTGTAATATAGCAAACCATAAATCTT 457215 Query 155776 GGGCATTAATTTGCTTGTTGTATCTGCCTTC-CGACT-CATATTTCATATACAGCGTTCG 155833 | ||| || | || || || || || | || ||||||| |||| | || Sbjct 457214 GTGCAAGAACTG--TTTTTTTACCTAAATTTTCTTCTTCATATTTTGTATATAATTTTTC 457157 Query 155834 GTAATCCTCACCGTAACAATCACTCAGTCCAGGGCACTTATCGGGGCAAAACAGCGACCA 155893 | || ||||| || | ||||| | || || || | || || || | | | ||| Sbjct 457156 AAATTCTTCACCCCAAGATTCACTTAAACCTGGACATTCATTAGGACACATTAAAGTCCA 457097 Query 155894 AATTTTATTACCGATTACACGCTCCATAAATACATCACTCGCCCAAATAGCATAGAAAAG 155953 |||||| | | || | || |||||||| |||| |||| |||||||| || | Sbjct 457096 GTGTTTATTTTCTTTAACCCTCTTCATAAATAAATCAGGTACCCATATAGCATAAAATAA 457037 Query 155954 GTCCCTTGCCTTTGACTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAAT 156013 || | || || | || || | |||||||| || | || ||||| ||||| ||| Sbjct 457036 ATCACGAGCTCTTAATTCTTCTTTACCGTGATTTTTTCTTAAATCTAAAAATTCAAAAAT 456977 Query 156014 ATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTT---GCCACCCTG 156070 ||||| || |||||| | ||| | ||||||| ||| || || || |||||| || Sbjct 456976 ATCAGAGTGCCATGGCTCAATATATACAGCAAAAGAACCTTTTCTTTTTCCGCCACCTTG 456917 Query 156071 ATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGT 156130 ||||||||| | || || | ||| || || | || ||| |||| | ||||| || | Sbjct 456916 ATCTACATATCTTGCTGTATCATTAAAAACTCTTAACATTGGAACTAACCCATTTGATAT 456857 Query 156131 GCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAAT 156190 ||||| ||||| | ||||| ||| | |||| || || | | | || || Sbjct 456856 ACCATTAGTTCCTCTAATATAAGAATTTTGTCCTCGAATATCTTGTACAGCAACACCTAT 456797 Query 156191 ACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAAT 156250 ||| |||| |||| || || |||| ||||| || | || |||||||| || Sbjct 456796 ACCTCCTGCTGTTTTACTGATCAATGCACATTGCTTTAATGTTTCAAATATACCTTCTAT 456737 Query 156251 AGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGC 156310 |||||| || |||||||| || | | || ||| | ||| |||| ||||||||| | Sbjct 456736 TGAATCAGATTTCATTGATAATAAAAAACATGAAGACATTTGGGGTCTTGGTGTTCCCGA 456677 Query 156311 GTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 || |||| |||||| || |||||| ||||||| || | |||||| ||| ||| || | Sbjct 456676 ATTAAATAATGTAGGAGTAGCATGAGTAAAATATTTTTGAGACATTAAATGGTAAGT-TT 456618 Query 156371 CTTAATC-TTCTCAAGATTAGACCCGTGAATACAGATAGAGACCCTCATCCACATATGCT 156429 || || | || |||| || | || || | ||||| || ||||| | | ||| | Sbjct 456617 CTAAAGCTTTTTCAATATCATCAATATGTATTCCTATAGATACTCTCATTAATAAATGTT 456558 Query 156430 GAGGACGCTCTACAATCACTCCATCAATTCGCAGAAGGTATGCGCGTTCCAGAGTTTTAA 156489 ||||||| || | ||| || ||| || | | ||| | | || | ||||||| Sbjct 456557 GAGGACGTTCAATAATTTTATTATTAATACGTAATAAGTAAGACCTCTCTAATGTTTTAA 456498 Query 156490 ACCCGAAATAATCAAACAGAAAATC 156514 | || ||||||||| | |||||| Sbjct 456497 ATCCAAAATAATCATAATTAAAATC 456473 >seq1 Length=2470179 Score = 145 bits (160), Expect = 2e-29 Identities = 233/335 (70%), Gaps = 0/335 (0%) Strand=Plus/Plus Query 289018 CTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGT 289077 || ||||| ||| || ||||| ||||| ||||| |||| | || || | || || | Sbjct 1131587 CTTCTTTTAGAACCTACTGCATCTATTTCATCAATAAAAACAATGCAAGGTGCATGTTTT 1131646 Query 289078 CTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACA 289137 | || || ||| | ||||||| | ||| || | ||||||| |||||||| || Sbjct 1131647 TTTGCGGTTTGAAAAAGCTCTCTTATTCTTCTTGCACCTACACCAACAAACATTTCTTCA 1131706 Query 289138 AATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCC 289197 ||||| ||| | ||| |||| || || | ||||||||||| ||||| | ||||| || Sbjct 1131707 AATTCTGAACCAGATGCTTGGATAAAAGGCACATTTGCTTCCCCTGCAATAGCCCTAGCA 1131766 Query 289198 AGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCC 289257 | | ||| || |||||||||||| ||| ||||| | || || || | |||||| Sbjct 1131767 ATTAATGTTTTTCCTGTTCCAGGTTCTCCTGATAATAATATACCTTTGGGCAATTTTGCA 1131826 Query 289258 CCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATAT 289317 || || |||| || | | |||||| | || | ||||| | |||||| | | Sbjct 1131827 CCTATTTTAGTAAATTTATCTGAATTTTTTAAATAATCGATTATTTCTTGAAGTTCTTGT 1131886 Query 289318 TTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 ||| | |||||||||||| |||||| || ||||| Sbjct 1131887 TTTACTTCATCACATCCTTTTACATCTGCTAAAGT 1131921 >seq6 Length=1590816 Score = 123 bits (136), Expect = 7e-23 Identities = 321/480 (67%), Gaps = 11/480 (2%) Strand=Plus/Plus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 |||||||| || |||| | || | || || ||||| |||||| ||| || ||| || Sbjct 529394 CTATCAAATCTTCCAGGTCTTGTAATAGCAGGATCTAAAATATCGATTCTATTGGTTCCT 529453 Query 288910 GCCAATACAACAA-TAGAT--TCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTT 288964 || || ||||| | | ||| | | | | ||||||||||| || || || | Sbjct 529454 GCTAAAACAACTACTTGATCATTAGATGTATGGAATCCATCCAT--TTCAACAAGCATCT 529511 Query 288965 GATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACC-CGAATCGCTCCtt 289023 |||| | || | ||| |||||||||||| || | || | ||| | | | || || Sbjct 529512 GATTTAAAGTATTTTCTCTTTCATCATTTCCTCCACCTGCAAAACCTCCTTTTGATC-TT 529570 Query 289024 tttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCA 289083 ||| ||||||||||||||||| ||||| ||||| | | | || | || || ||| || Sbjct 529571 TTTCGCCCAACAGCATCAATTTCATCAATAAAAATAATAGATGGTGCATGTTTTCTTGCT 529630 Query 289084 ATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 ||||||||||||||| || | |||| ||| | || ||| | | ||| | ||| ||| Sbjct 529631 TGTGCAAATAATTCTCTAACTCTTGATGGTCCTATTCCTACAAATACTTCAATAAAATCA 529690 Query 289144 GAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 | | | || || | |||||||| || || || || || | || | || Sbjct 529691 CTTCCACTAATATTAAAAAAGGGAACATTTGCCTCACCAGCAACAGCTTTTGCTAATAGA 529750 Query 289204 GTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCA 289263 || || || ||||| |||| || ||||| | || ||||||| |||||| || | Sbjct 529751 GTTTTTCCGGTTCCCGGTGCACCACATAATAATGCACCTTTTGGTATTTTTGCACC-TAA 529809 Query 289264 GACTT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGC 289322 |||| |||||| | || | || ||||| || |||| ||| || ||| | |||||| Sbjct 529810 TACTTGATATTTTGCTGGATTTTTCAAAAAATCAACAAACTCCATAATTTCTTCTTTTGC 529869 >seq11 Length=733468 Score = 118 bits (130), Expect = 3e-21 Identities = 271/403 (67%), Gaps = 19/403 (5%) Strand=Plus/Minus Query 380962 AATGTAAAAATCTGGAATGGTAATGGTAGTCGTGAGTTTTTAGATTCCCGTGGTCTAACC 381021 ||||||| ||| ||| | | |||||| | | |||||||||||| | || Sbjct 126439 AATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAATTATTT 126380 Query 381022 AATAACGAAGAAGATGACCTTGGTCCTATTTACGGATTTCAGTGGAGACATTTTAACGCC 381081 ||| |||| ||||| | || || || || |||||||| |||||||| ||| || Sbjct 126379 CATAGAGAAGTTAATGACTTAGGGCCGATCTATGGATTTCAATGGAGACACTTTGGTGCT 126320 Query 381082 GATTAT---GATAATTGTGATAGTGATTATACTGGTAAGGGTGTCGACCAGTTAAAATAT 381138 || || |||| ||| || |||||||| | ||| ||||| || ||||||||| || Sbjct 126319 GAATACACAGATA--TGT-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAAAAAAT 126263 Query 381139 ATCATAGACCAGCTAAAAAATCCTGAAACAAGAAATTCACGCCGACTAATTATGACTGCG 381198 || || | | |||||| | ||| | | | ||| | ||| || ||| Sbjct 126262 ATTATCAATTTAATTAAAAATGATCCGACATGTA------GACGAATTATTTTGTGTGCA 126209 Query 381199 TGGAATCCTTGCCAGATTAA--TGATATGGCTTTACCACCTTGCCATATTTTATGCCAGT 381256 |||||| | ||||| | | | ||||| ||||| ||||| ||||||||||| || | Sbjct 126208 TGGAATG--TAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAAT 126151 Query 381257 TCAATGTTTCGGCTGGTAATAAGTTAAGTTGTGCTTTATATCAGCGTAGCGGTGATGTTG 381316 | |||||| | ||| || ||| ||| | | ||||| || ||||| | | Sbjct 126150 TTTATGTTTTTGATGGAAAA---TTATCATGTATTATGTATCAACGATCTTGTGATTTAG 126094 Query 381317 GTCTGGGTGTTCCATTCAATATTGCTTCGTATTCTATGCTTAC 381359 |||| ||||||||||| ||||||||||| |||||||| |||| Sbjct 126093 GTCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTAC 126051 >seq7 Length=1182114 Score = 84.2 bits (92), Expect = 6e-11 Identities = 68/81 (84%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 408942 AAGTTCTATTAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCG 409001 ||| || |||| |||||| |||||||| |||||||||||| ||||| |||||||||||| Sbjct 311970 AAGATCCATTAGCTCAGT-GGTTAGAGCGTCGGTCTTATGTACCGAAGGTCGTGGGTTCG 311912 Query 409002 AGTCCCACATAGAACATTTTT 409022 | ||||||| || |||| || Sbjct 311911 AAACCCACATGGATCATTATT 311891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816675974513