Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_021901.1 Length=197693 Score E Sequences producing significant alignments: (Bits) Value seq11 113 6e-20 seq13 105 8e-18 >seq11 Length=733468 Score = 113 bits (124), Expect = 6e-20 Identities = 314/470 (67%), Gaps = 25/470 (5%) Strand=Plus/Minus Query 172529 TGATTTAGGCCCAATTTATGGATTTCAATGGAGACATGCAGGGGCTCAATATATCGAC-T 172587 ||| ||||| || || |||||||||||||||||||| || ||| |||| | || | Sbjct 126365 TGACTTAGGGCCGATCTATGGATTTCAATGGAGACACTTTGGTGCTGAATACACAGATAT 126306 Query 172588 GTGATACAGATTACACAGGACAAGGAGTGGACCAATTAAGTCAAACTATTAATACTTTAC 172647 || || | ||||| | || |||| || || || |||| ||| ||||| | |||| Sbjct 126305 GT-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA---AAAATATTATCAATTTAA 126250 Query 172648 ---AAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAGT---TGGAATGTACCTCAAC 172701 |||| | || | ||||| | || || || | || ||||||||| | Sbjct 126249 TTAAAAATGATCCGACATGTAGACGAAT--TATTTTGT-GTGCATGGAATGTAAAAGATT 126193 Query 172702 TTGATAAAATGGTTCTTCCTCCTTGCCATACTTTAGCACAATTTTATGTCA--Gaaaaaa 172759 | ||| |||||| | |||||||| |||| |||| ||||||||||| || || Sbjct 126192 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 126133 Query 172760 aTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGATTTAGGATTGGGGGTACCTTA 172819 | ||| | ||| | |||||| |||| ||||||||| | || || || | Sbjct 126132 AATTATCATGTATTATG-----TATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCATT 126078 Query 172820 TAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAAGTAAATGGTGCAATTTAACT 172877 |||||||| | ||||| || |||| ||| | || || || || |||||| Sbjct 126077 TAATATTGCTTCCTATTCTATATTTACATA--TATGATAGCACAAGTATGTAATTTACAA 126020 Query 172878 CCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAATCATGTTGAACCT 172937 |||| | ||||| ||| || ||| ||| ||| || ||| |||||||||||| | Sbjct 126019 CCAGCTGAATTTATACATGTATTAGGAAATGCTCATGTTTATAATAATCATGTTGAAAGT 125960 Query 172938 TTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAAATGTTAAATT 172987 ||||| |||| ||||| |||| ||| ||| |||| || | ||||||| Sbjct 125959 TTAAAAATTCAGTTAAATAGAACACCCTATCCTTTCCCTTCTCTTAAATT 125910 >seq13 Length=615600 Score = 105 bits (116), Expect = 8e-18 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 194582 AAAAT--AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGA 194639 ||||| ||||| |||||||| ||||| | ||| || | | ||||| ||||| | || Sbjct 433912 AAAATCGAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGA 433971 Query 194640 TAAAATGCATGCTAGAAGTCATGGGCAAGTAACTACT-TTACATCGACAACCAAATTGTG 194698 |||||| ||||| |||||| || | |||||| ||||| ||||||||| | Sbjct 433972 TAAAATACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAG 434030 Query 194699 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCC 194758 | | || || ||| ||||||||||||||||||||||||| ||| ||||| || | Sbjct 434031 GAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTC 434090 Query 194759 ATGGTGCTACTCAATTCTTAAATGAA 194784 |||| || || || | ||||| ||| Sbjct 434091 ATGGATCTGCTAAAATGTTAAAAGAA 434116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632489212600120