Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5 143 2e-29 seq8 89.7 5e-13 >seq5 Length=1684710 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| |||||| | ||||| ||||||| ||||| ||||| || || || ||| | | Sbjct 156536 ATGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA 156595 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| | |||| || ||| ||| |||||||| ||||||||||| || || |||||| Sbjct 156596 GATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 156655 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | || || ||||| || ||||| | || ||| |||| | || || |||||| Sbjct 156656 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATAAC 156715 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || |||| ||||| Sbjct 156716 ATTCAAAAAGAATCAACCTTACATTTGGT 156744 >seq8 Length=956651 Score = 89.7 bits (98), Expect = 5e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| || |||| || || || || ||||| || || | ||||| | |||||| Sbjct 457402 AATTGAAGCTAGATTACAAACAGCTACTTCATCAGGTGATGTATATTCAATAATTTCACA 457343 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 ||| ||||||||||| || || || |||||||||| |||||| ||| ||||| || Sbjct 457342 ACATAAATTACTACATTTAATTGTCCCTAAATTTTTTTGATTAGATTTAGAATTACATGC 457283 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTG 139238 |||||| || | |||||| ||| |||||||| | ||| Sbjct 457282 ATCTTTATATAACATATATGGTACACCAGTTTCAATTTG 457244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897324437720