Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq8 233 3e-56 seq5 192 9e-44 >seq8 Length=956651 Score = 233 bits (258), Expect = 3e-56 Identities = 188/227 (83%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| ||||||||||||||||||||||||| ||| ||||||| |||| | Sbjct 415286 TGCAAATTTTCGTAAAAACATTAACAGGAAAAACAATCACTCTTGATGTCGAACCATCTG 415345 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| ||| ||||| ||| ||||||||| || ||||| ||||| | Sbjct 415346 ATACTATTGAAAATGTTAAAGCAAAAATTCAAGATAAAGAAGGTATCCCACCTGATCAGC 415405 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 ||||| | |||||||| || ||||||||||| ||| ||||| ||| | |||||||||| Sbjct 415406 AAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGAAGAACATTATCTGATTATAATA 415465 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGT 146258 ||||||||||||| || | |||||||| ||| |||||||||||||| Sbjct 415466 TACAAAAAGAATCAACATTACATTTAGTTTTAAGATTAAGAGGAGGT 415512 Score = 156 bits (172), Expect = 7e-33 Identities = 134/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 146056 CAGGAAAAACAATTACTATTGATGTAGAACATAACGATACTATTCAAAATGTAAAAAATA 146115 ||||||||||||| ||| ||||||| |||| ||||||||| ||||||| ||| | Sbjct 414684 CAGGAAAAACAATCACTCTTGATGTCGAACCATCTGATACTATTGAAAATGTTAAAGCAA 414743 Query 146116 AAATACAACTTAAAGAAGGCATTCCACCCGATCAACAAAGACTCATTTTTGCAGGTAAAC 146175 |||| ||| ||||||||| |||||||| ||||| |||||| | |||||||| || |||| Sbjct 414744 AAATTCAAGATAAAGAAGGTATTCCACCTGATCAGCAAAGATTAATTTTTGCTGGAAAAC 414803 Query 146176 AATTAGATGATAATAGAACGTTAACAGATTATAATATACAAAAAGA 146221 ||||||| ||| ||||| ||| | || ||||| ||||||||||| Sbjct 414804 AATTAGAAGATGGCAGAACATTATCTGACTATAACATACAAAAAGA 414849 >seq5 Length=1684710 Score = 192 bits (212), Expect = 9e-44 Identities = 172/213 (81%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAA-CATAAC 146090 ||||||| || ||||||||||||| ||||||||||||||| ||||||| ||| ||| | Sbjct 156537 TGCAAATCTTTGTAAAAACATTAACCGGAAAAACAATTACTCTTGATGTTGAACCATCA- 156595 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| ||| ||||| ||| ||||||||| ||||| || |||||| Sbjct 156596 GATACAATTGAAAATGTTAAAGCAAAAATCCAAGATAAAGAAGGAATTCCCCCTGATCAA 156655 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 |||||| | |||||||| || ||||||||||| ||| ||||| ||| | || ||||| Sbjct 156656 CAAAGATTAATTTTTGCTGGAAAACAATTAGAAGATGGCAGAACTTTATCTGACTATAAC 156715 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTA 146243 || ||||||||||| || | ||||| ||| || Sbjct 156716 ATTCAAAAAGAATCAACCTTACATTTGGTAATA 156748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786165918473080