Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq13 109 7e-19 seq11 100 4e-16 >seq13 Length=615600 Score = 109 bits (120), Expect = 7e-19 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 193786 AAAAT--AAAATTTTTATAGGGCCAACTTATTATCATCGTCTTAAACATATGGTTAAGGA 193843 ||||| ||||| |||||||| ||||| | |||||| | | ||||||||||| | || Sbjct 433912 AAAATCGAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGA 433971 Query 193844 TAAAATGCATGCTAGAAGTCATGGACAAGTGACTA-CTTTACATCGACAACCAAATTGTG 193902 |||||| ||||| |||||| |||| | |||| ||||| ||||||||| | Sbjct 433972 TAAAATACATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAG 434030 Query 193903 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAGAAAGACTGTATTTTAGTTC 193962 | | || || ||| ||||||||||||||||||||||| | ||| ||||| || || Sbjct 434031 GAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTC 434090 Query 193963 ATGGTGCTACTCAATTCTTGAATGAA 193988 |||| || || || | || || ||| Sbjct 434091 ATGGATCTGCTAAAATGTTAAAAGAA 434116 Score = 86.0 bits (94), Expect = 8e-12 Identities = 188/275 (68%), Gaps = 15/275 (5%) Strand=Plus/Plus Query 192887 TAAACAAGCCATTGGA-TTTATTCCGTGTCACAACTTAAAA-ACGG----AAACAGTATC 192940 ||||||||| || ||| ||||| || || | |||| | |||| | || || | Sbjct 432652 TAAACAAGCAATGGGAATTTAT---GTAACAAATTTTAATATACGGTTAGATACGTTAGC 432708 Query 192941 TCATACATTAAATTATCCACAAAAACCCCTTGT---TACCACAGATATTGCAAAATTTAA 192997 |||| |||| | |||||||||||||| | || ||| | || || || || ||||| Sbjct 432709 TCATTTATTATACTATCCACAAAAACCATTAGTATGTACAAAAGCTACTG-AATATTTA- 432766 Query 192998 TAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTGG 193057 | || | |||| ||| ||| || ||||| ||||| || || |||||||| || Sbjct 432767 -CACTTTAAAGATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGCTATACAGG 432825 Query 193058 TTATAATCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTGG 193117 ||||| |||||||| ||| | || | ||| || | |||||||| | || ||||| | Sbjct 432826 ATATAACCAAGAAGATAGTTTAATCATGAATCAATCATCTATTGATCGGGGTCTATTTAG 432885 Query 193118 TACTATAACTTATAATACATATACAGTTGAAGAAA 193152 | | | |||| ||| ||||| |||||||| Sbjct 432886 AAGTGTTTTTTATCGTACTTATACTAGTGAAGAAA 432920 >seq11 Length=733468 Score = 100 bits (110), Expect = 4e-16 Identities = 309/470 (66%), Gaps = 25/470 (5%) Strand=Plus/Minus Query 168656 TGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGCAGGAGCTCAATATATTGA-CT 168714 ||| ||||| || || |||||||||||||||||||| || ||| |||| | || | Sbjct 126365 TGACTTAGGGCCGATCTATGGATTTCAATGGAGACACTTTGGTGCTGAATACACAGATAT 126306 Query 168715 GTGATACAGATTACACCGGACAAGGAGTAGACCAATTAAGTCAAACTATAAATACTTTA- 168773 || || | ||||| | | |||| || || || |||| ||| ||| | | |||| Sbjct 126305 GT-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA---AAAATATTATCAATTTAA 126250 Query 168774 --CACAACAATCCGGAAAATAGAAGAATATTAATTAATAGT---TGGGATGTACCACAAC 168828 | || ||||| | |||| || |||| || | || ||| ||||| | | Sbjct 126249 TTAAAAATGATCCGACATGTAGACGA--ATTATTTTGT-GTGCATGGAATGTAAAAGATT 126193 Query 168829 TTGATAAAATGGTTCTTCCCCCTTGTCACACTTTAGTGCAATTTTATG----TAAGGAAA 168884 | ||| |||||| | || |||||||| | |||| |||||||||| | | | || Sbjct 126192 TAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTTTATGTTTTTGATGGAA 126133 Query 168885 AAATCAATCTTAGATTGTCAGTTGTATCAAAGATCAGCTGATTTAGGATTAGGAGTACCT 168944 || | ||| | ||| |||||||| |||| ||||||||| | || || || Sbjct 126132 AATT--ATCATGTATT-----ATGTATCAACGATCTTGTGATTTAGGTCTTGGTGTTCCA 126080 Query 168945 TATAATATTGGATTTTATTCATTTTTAACACTTGTGCTAAGTAAATGGTGTAATTTGACG 169004 | |||||||| | ||||| | || ||| | || || || |||||||| Sbjct 126079 TTTAATATTGCTTCCTATTCTATATTTACATATATGATAGCACAAGTATGTAATTTACAA 126020 Query 169005 CCTGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGTATTCAAACCATGTTGAACCT 169064 || | | ||||| ||| || ||| ||| ||| || ||| || ||||||||| | Sbjct 126019 CCAGCTGAATTTATACATGTATTAGGAAATGCTCATGTTTATAATAATCATGTTGAAAGT 125960 Query 169065 TTAAAGGTTCAATTGAAAAGAAAACCATATTCTTTTCCAAATGTTAAATT 169114 ||||| |||| || || |||| ||| ||| |||| || | ||||||| Sbjct 125959 TTAAAAATTCAGTTAAATAGAACACCCTATCCTTTCCCTTCTCTTAAATT 125910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635177210953720