Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_023613.1 Length=204815 Score E Sequences producing significant alignments: (Bits) Value seq11 123 3e-23 seq13 105 9e-18 seq4 96.9 5e-15 >seq11 Length=733468 Score = 123 bits (136), Expect = 3e-23 Identities = 424/644 (66%), Gaps = 23/644 (4%) Strand=Plus/Minus Query 180357 AATTTGATTTAAGTGAAGGAATTGTACCACTTCTTACAACaaaaaaaaTAGTTTATAAAA 180416 ||||| ||||||||||| ||| | ||| | | |||||||||||| || ||| ||| | Sbjct 126561 AATTTAATTTAAGTGAAT--ATT-TCCCATTATTAACAACAAAAAAATTA-TTTGTAAGA 126506 Query 180417 A-TATTCTTAAAGAATTATTATGGATAATGAAAGGTTTAACAAATTCTAATTTGTTAAAT 180475 ||| || |||| ||||||||| | || | || ||||||| ||| ||| Sbjct 126505 GGTATCATTGAAGAGTTATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 126446 Query 180476 GATATTGGTGTTAAAGTGTGGAATGATAATGGTTCGCGTAAGTTTTTAGATTCTTGTGGA 180535 || | ||| | | | ||| | | |||||| | | ||||||||||| | | | Sbjct 126445 GAAAAAAATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATAATAGGAAA 126386 Query 180536 TTTCATTT--TCGAAAAGAAGGTGATTTAGGACCAATTTATGGATTTCAATGGAGACATG 180593 || |||| | || ||| ||| ||||| || || |||||||||||||||||||| Sbjct 126385 TT--ATTTCATAGAGAAGTTAATGACTTAGGGCCGATCTATGGATTTCAATGGAGACACT 126328 Query 180594 CAGGAGCTCAATATATTGA-CTGTGATACCAACTATATCGGGCAAGGTATAGACCAATTA 180652 || ||| |||| | || ||| || | | |||| | ||||| | || || ||| Sbjct 126327 TTGGTGCTGAATACACAGATATGT-ATGCTGATTATAAAGATAAAGGTGTTGATCAGTTA 126269 Query 180653 AGCCAAGTTATAGAAACTATAAAAAATAATCCCGAATGCCGAAGAATAATCATAGATAGT 180712 | | |||| | || |||||| |||| ||| || |||| || | | Sbjct 126268 AAAAATATTATCAATTTAATTAAAAATGATCCGACATGTAGACGAATTATTTTGTGTGCA 126209 Query 180713 TGGAATGTATCACAATTACCAGATATGGCTCTTCCACCATGTCACTGTTTGGTACAATTT 180772 ||||||||| | | ||| | ||||| | || || ||||| ||| |||||| Sbjct 126208 TGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCAATTT 126149 Query 180773 TATG--TTAGAAATAAAATTTATTTAGATTGCCAATTGTATCAAAGATCTGCAGATTTAG 180830 |||| || || |||||| | ||| |||||||| ||||| ||||||| Sbjct 126148 TATGTTTTTGATGGAAAATTATCATGTATT-----ATGTATCAACGATCTTGTGATTTAG 126094 Query 180831 GATTAGGTGTACCATATAATATTGCTTTCTATTC-AT-TTTTGGTATGTGTTCTCTCAAA 180888 | | ||||| |||| ||||||||||| |||||| || ||| ||| || | | | || Sbjct 126093 GTCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATATATGATAGCAC-AA 126035 Query 180889 GTGGTGCAATTTAACCCCTGGAAAATTTATTCACACTTTTGGGGATGTTCATGTATATTC 180948 || || |||||| || | ||||||| || || || ||| |||||| ||| Sbjct 126034 GT-ATGTAATTTACAACCAGCTGAATTTATACATGTATTAGGAAATGCTCATGTTTATAA 125976 Query 180949 TAACCATATTGACCAATTAAAAATTCAATTAAGCAGAA-ACCCT 180991 ||| ||| |||| ||||||||||| |||| |||| ||||| Sbjct 125975 TAATCATGTTGAAAGTTTAAAAATTCAGTTAAATAGAACACCCT 125932 >seq13 Length=615600 Score = 105 bits (116), Expect = 9e-18 Identities = 124/165 (75%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 201918 AAAATTTTTATAGGCCCAACATACTATCATCGTCTTAAACATATGGTTAAGGATAAAATG 201977 ||||| |||||||| ||||||| ||||| | | ||||||||||| | |||||||| Sbjct 433919 AAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGATAAAATA 433978 Query 201978 CATGCGAGAAGTCATGGTCAAGTAAC-AACATTACATCGTCAACCAAACTGTGGTCGGTC 202036 ||||| |||||| || | |||| | |||||| | ||||||| || | || Sbjct 433979 CATGCCAGAAGTAGAGGACCTCTAACTATGATTACA-AGACAACCAACAGAAGGAAGATC 434037 Query 202037 CCAAGGTGGTGGATTAAGATTTGGAGAAATGGAAAAAGATTGTAT 202081 || |||||| |||||||||||||||||||||| ||||||||| Sbjct 434038 AAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTAT 434082 >seq4 Length=1653377 Score = 96.9 bits (106), Expect = 5e-15 Identities = 240/361 (66%), Gaps = 14/361 (4%) Strand=Plus/Plus Query 172907 GGTTACATTGCAGAACAAACTGATTATAAACATGGTGAACAAAACCTTTGTGAAACTATA 172966 ||||| ||||||||||| | || || | ||||||||| | || ||||||| Sbjct 589734 GGTTATATTGCAGAACATAGTGCATACCATCATGGTGAATCATCACTACAACAAACTATT 589793 Query 172967 ATAAAATTTGCACAGGATTTTGTAGGTACAAATAACATAACATTACTTGAACCAGATGGT 173026 ||||| | || || ||||| || |||| || |||| || | |||||| ||| Sbjct 589794 ATAAATATGGCTCAAACATTTGTTGGGTCAAACAATATAAATTTTTTAGAACCATGTGGA 589853 Query 173027 CAGTTTGGTACTAGACTTGAAGGAGGTAAAGATTCAGCCGCATCAAGGTATATTTATACT 173086 || ||||||| |||| ||||| ||||||||| || | || | |||||||| | ||| Sbjct 589854 CAATTTGGTAGTAGAAAAGAAGGTGGTAAAGATGCATCTGCGGCTAGGTATATATTTACA 589913 Query 173087 AAACC-GCATAAAATTTTAAAATATATATTTAGAGAAGAAGATGACCCTATTTTAAT--- 173142 |||| |||| | | || || |||||||| ||| ||||| || ||||||| Sbjct 589914 AAACTTGCATCATCTACTAGAAG-TATATTTAATGAATTTGATGATCCAATTTTAAAATA 589972 Query 173143 TTTTACTCCGGAAGGAGAACCAA-----CCAC----TTTTGTTCCCGTGATCCCTCTTAT 173193 ||| | | |||||| || || |||| || | | || || || ||| || Sbjct 589973 TTTAAATGAAGAAGGACAAAAAATAGAACCACAATATTATATGCCAGTTATTCCTACAAT 590032 Query 173194 ATTAATTAATGGTTCAATTGGTATAGGAACTGGATGGTCGTGTTTTATTCCTCAATATAA 173253 || | ||||| | |||||||||||||| | || | |||||||| | ||||| Sbjct 590033 TCTAGTAAATGGGTGTGAAGGTATAGGAACTGGTTATTCATCATTTATTCCAAACTATAA 590092 Query 173254 T 173254 | Sbjct 590093 T 590093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 655279598641000