Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_023615.1 Length=196456 Score E Sequences producing significant alignments: (Bits) Value seq11 118 1e-21 seq13 100 4e-16 >seq11 Length=733468 Score = 118 bits (130), Expect = 1e-21 Identities = 437/670 (65%), Gaps = 30/670 (4%) Strand=Plus/Minus Query 171542 AATTTGATTTAAGTAGTGGAACTATACCATTACTTACTACaaaaaaaaTTGTATATACTA 171601 ||||| |||||||| | | | | |||||| | || ||||||||| || | | || | Sbjct 126561 AATTTAATTTAAGT---GAATATTTCCCATTATTAACAACAAAAAAA-TTATTTGTAAGA 126506 Query 171602 A-TATCCTTAAAGAACTTTTATGGGTTATTAAAGGTTCAACTGATTCAAAACAATTAAAT 171660 |||| || |||| | |||||| |||| | || ||| || ||| |||| Sbjct 126505 GGTATCATTGAAGAGTTATTATGGTTTATAAGGGGAGAAACAAATGGAAATACATTATTA 126446 Query 171661 GATATAGGTGTTAAAGTTTGGAATGATAATGGTTCTCGTGAATTTTTAGATTTATGCGGG 171720 || | | ||| | | | ||| | | |||||| | | || ||||||||| || | Sbjct 126445 GAAAAAAATGTAAGAATATGGGAAGCTAATGGGACAAGAGAGTTTTTAGATA-ATAGGAA 126387 Query 171721 TTTACTGAA-AGAAAAGAAGGTGATTTAGGTCCAATTTATGGATTTCAATGGAGACATGC 171779 ||| | | ||| ||| ||| ||||| || || |||||||||||||||||||| Sbjct 126386 ATTATTTCATAGAGAAGTTAATGACTTAGGGCCGATCTATGGATTTCAATGGAGACACTT 126327 Query 171780 AGGGGCTCAATATATCGACTGTTATACAGATTACACAGGACAAGGAGTGGACCAATTAAG 171839 || ||| |||| | || ||| | ||||| | || |||| || || || |||| Sbjct 126326 TGGTGCTGAATACACAGATATGTATGCTGATTATAAAGATAAAGGTGTTGATCAGTTAA- 126268 Query 171840 TCAAACTATTAATACTTTAC---AAAACAACCCAGAAAGTAGAAGGATGTTAATTGATAG 171896 ||| ||||| | |||| |||| | || | ||||| | || || || | | Sbjct 126267 --AAAATATTATCAATTTAATTAAAAATGATCCGACATGTAGACGAAT--TATTTTGT-G 126213 Query 171897 T---TGGAATGTACCTCAACTTGATAAAATGGTTCTTCCTCCTTGCCACACTTTAGCACA 171953 | ||||||||| | | ||| |||||| | |||||||| || | |||| || Sbjct 126212 TGCATGGAATGTAAAAGATTTAGATCAAATGGCATTACCTCCTTGTCATATTTTATGTCA 126153 Query 171954 ATTTTATGTCA--GaaaaaaaTCAATCTTAGATTGTCAGTTATATCAAAGATCAGCTGAT 172011 ||||||||| || ||| ||| | ||| | |||||| |||| |||| Sbjct 126152 ATTTTATGTTTTTGATGGAAAATTATCATGTATTATG-----TATCAACGATCTTGTGAT 126098 Query 172012 TTAGGATTGGGGGTACCTTATAATATTGGATTTTATTC-ATTTTTA-ATACTTGTGTTAA 172069 ||||| | || || || | |||||||| | ||||| || |||| ||| | || || Sbjct 126097 TTAGGTCTTGGTGTTCCATTTAATATTGCTTCCTATTCTATATTTACATA--TATGATAG 126040 Query 172070 GTAAATGGTGCAATTTAACTCCAGGAAAGTTTATTCATACTTTTGGAGATGTTCACGTGT 172129 || || |||||| |||| | ||||| ||| || ||| ||| ||| || | Sbjct 126039 CACAAGTATGTAATTTACAACCAGCTGAATTTATACATGTATTAGGAAATGCTCATGTTT 125980 Query 172130 ATTCAAATCATGTTGAACCTTTAAAGGTTCAATTAAAAAGAAAACCATATACTTTTCCAA 172189 || |||||||||||| |||||| |||| ||||| |||| ||| ||| |||| || Sbjct 125979 ATAATAATCATGTTGAAAGTTTAAAAATTCAGTTAAATAGAACACCCTATCCTTTCCCTT 125920 Query 172190 ATGTTAAATT 172199 | ||||||| Sbjct 125919 CTCTTAAATT 125910 >seq13 Length=615600 Score = 100 bits (110), Expect = 4e-16 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 193339 AAAAT--AAAATTTTTATAGGGCCAACTTATTACCATCGTCTTAAACACATGGTTAAGGA 193396 ||||| ||||| |||||||| ||||| | ||| || | | ||||| ||||| | || Sbjct 433912 AAAATCGAAAATATTTATAGGACCAACATTTTATCAAAGATTAAAACATATGGTAGAAGA 433971 Query 193397 TAAAATGCATGCTAGAAGTCATGGGCAAGTGACTACT-TTACATCGACAACCAAATTGTG 193455 |||||| ||||| |||||| || | | |||| ||||| ||||||||| | Sbjct 433972 TAAAATACATGCCAGAAGTAGAGGACCTCTAACTATGATTACAA-GACAACCAACAGAAG 434030 Query 193456 GTCGTTCTCAAGGTGGAGGTTTAAGATTTGGAGAAATGGAAAAAGACTGTATTTTAGTCC 193515 | | || || ||| ||||||||||||||||||||||||| ||| ||||| || | Sbjct 434031 GAAGATCAAGAGATGGTGGTTTAAGATTTGGAGAAATGGAAAGAGATTGTATGATATCTC 434090 Query 193516 ATGGTGCTACTCAATTCTTAAATGAA 193541 |||| || || || | ||||| ||| Sbjct 434091 ATGGATCTGCTAAAATGTTAAAAGAA 434116 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 192493 CTCATACATTAAATTATCCACAAAAACCACTTGT---TACCACAGATATTGCAAAATTTA 192549 ||||| |||| | ||||||||||||||| | || ||| | || || || || ||||| Sbjct 432708 CTCATTTATTATACTATCCACAAAAACCATTAGTATGTACAAAAGCTACTG-AATATTTA 432766 Query 192550 ATAAATTAGACGATTATCCAAATGGTATTAATGCTATTGTTGCTATAGCTTGCTATACTG 192609 | || | |||| ||| ||| || ||||| ||||| || || |||||||| | Sbjct 432767 C--ACTTTAAAGATTTACCAGCTGGAATAAATGCAATTGTAGCAATTATGTGCTATACAG 432824 Query 192610 GCTATAACCAAGAAGACAGTATTATTTTAAATAAAGCTTCTATTGAAAGAGGATTATTTG 192669 | |||||||||||||| ||| | || | ||| || | |||||||| | || ||||| Sbjct 432825 GATATAACCAAGAAGATAGTTTAATCATGAATCAATCATCTATTGATCGGGGTCTATTTA 432884 Query 192670 GCACTATAACTTATAATACATATACAGTTGAAGAAA 192705 | | | | |||| ||| ||||| |||||||| Sbjct 432885 GAAGTGTTTTTTATCGTACTTATACTAGTGAAGAAA 432920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628530815024640