Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Plasmodium_20vinckei_20vinckei_20[genbank_20GCA_5F000709005.1_202014 -06-17] 49 sequences; 18,221,643 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8 208 1e-48 seq5 187 5e-42 >seq8 Length=956651 Score = 208 bits (230), Expect = 1e-48 Identities = 183/228 (80%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||||||||| || | | |||||| || | || |||||||| ||||||||||||||||| Sbjct 415512 ACCTCCTCTTAATCTTAAAACTAAATGTAATGTTGATTCTTTTTGTATATTATAATCAGA 415453 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || |||| || ||||||| ||||||||||||||| |||| |||||| ||||| || || Sbjct 415452 TAATGTTCTTCCATCTTCTAATTGTTTTCCAGCAAAAATTAATCTTTGCTGATCAGGTGG 415393 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || ||||| ||||||||||| |||||||| ||||||||||| |||||| ||||| || Sbjct 415392 GATACCTTCTTTATCTTGAATTTTTGCTTTAACATTTTCAATAGTATCAGATGGTTCGAC 415333 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || || || ||||| || || ||||| || || ||||| Sbjct 415332 ATCAAGAGTGATTGTTTTTCCTGTTAATGTTTTTACGAAAATTTGCAT 415285 Score = 159 bits (176), Expect = 7e-34 Identities = 135/166 (81%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 82620 TCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAG 82679 ||||| ||||| ||||| ||||||| |||| || ||||||| ||||||||||||||| Sbjct 414849 TCTTTTTGTATGTTATAGTCAGATAATGTTCTGCCATCTTCTAATTGTTTTCCAGCAAAA 414790 Query 82680 ATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTT 82739 |||| |||||| ||||| || || || ||||| ||||||||||| |||||||| |||||| Sbjct 414789 ATTAATCTTTGCTGATCAGGTGGAATACCTTCTTTATCTTGAATTTTTGCTTTAACATTT 414730 Query 82740 TCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTG 82785 ||||| |||||| ||||| || || | ||| || || || |||| Sbjct 414729 TCAATAGTATCAGATGGTTCGACATCAAGAGTGATTGTTTTTCCTG 414684 >seq5 Length=1684710 Score = 187 bits (206), Expect = 5e-42 Identities = 160/198 (81%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 82614 GTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCA 82673 || |||||||| || || ||||| ||||||| | |||| || ||||||| |||||||||| Sbjct 156732 GTTGATTCTTTTTGAATGTTATAGTCAGATAAAGTTCTGCCATCTTCTAATTGTTTTCCA 156673 Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 ||||| |||| |||||||||||| || || |||||||| |||||||| || |||||||| Sbjct 156672 GCAAAAATTAATCTTTGTTGATCAGGGGGAATTCCTTCTTTATCTTGGATTTTTGCTTTA 156613 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 ||||||||||| ||||| ||||| || || | ||| || || || || || || || Sbjct 156612 ACATTTTCAATTGTATCTGATGGTTCAACATCAAGAGTAATTGTTTTTCCGGTTAATGTT 156553 Query 82794 TTTACAAATATCTGCATT 82811 |||||||| || |||||| Sbjct 156552 TTTACAAAGATTTGCATT 156535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826583596611